Propagation of TyrR regulog to Colwellia psychrerythraea 34H
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Colwellia psychrerythraea 34H |
| Orthologous TF(s) | CPS_3764 |
| Regulated genes | 16 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -83
Score: 4.5 Sequence: TTGTAAAGCATACTTGACTT
Position: -41
Score: 4.4 Sequence: AAGTCAAATAAACTTTACAA
Locus tag: CPS_1160
|
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| CPS_1160 | -83 | 4.5 | TTGTAAAGCATACTTGACTT | |
| -41 | 4.4 | AAGTCAAATAAACTTTACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3409 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3409 | -99 | 4.7 | AAGTAAAGCTTACTTGACAC |
| -55 | 4.3 | AAGTCAAGCTTAGTTGACAT | ||
| Shewanella loihica PV-4 | Shew_3626 | -90 | 4.4 | ATGTAAAGCATGCTTGACCT |
| -45 | 4.1 | ATGTAAAGGGTGTTTGACAT | ||
| Shewanella pealeana ATCC 700345 | Spea_0139 | -106 | 3.9 | AAGTAAAGCAAGCTTGACTT |
| -62 | 4.2 | AAGTCAAGCGTGCTTTACAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4179 | -105 | 3.9 | AAGTAAAGCATGCTTGACTT |
| -61 | 4.5 | AAGTCAAGCTTACTTTACAT | ||
| Shewanella piezotolerans WP3 | swp_0181 | -47 | 4.4 | AAGTAAAGCTCACTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_4363 | -111 | 3.9 | AAGTAAAGCAAGCTTGACTT |
|
Position: -284
Score: 3.6 Sequence: TTGTTAACTCAATGTTGCAA
Locus tag: CPS_1170
|
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| CPS_1170 | -284 | 3.6 | TTGTTAACTCAATGTTGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pep3 | ||||
| Ortholog function: peptidase, M13 family | ||||
| Shewanella oneidensis MR-1 | SO_3844 | -173 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0791 | -276 | 3.6 | ATGTTAAGTTTATTTGCCTT |
| Shewanella sp W3-18-1 | Sputw3181_3384 | -276 | 3.6 | ATGTTAAGTTTATTTGCCTT |
| Shewanella sp ANA-3 | Shewana3_0759 | -172 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella sp MR-4 | Shewmr4_3179 | -173 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella sp MR-7 | Shewmr7_0787 | -172 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella baltica OS155 | Sbal_0685 | -173 | 4 | CTGGTAACCTTTAGTTACAT |
| Shewanella denitrificans OS217 | Sden_1089 | -224 | 3.8 | TTGGTTACATAAATTGCCAG |
| Shewanella loihica PV-4 | Shew_2973 | -180 | 4.1 | GAGGAAATCTTTACTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_3177 | -237 | 3.8 | TGGGAAACCTTTTCTTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3258 | -202 | 3.9 | TAGGAAACCTTTTCTTACAC |
| Shewanella piezotolerans WP3 | swp_3866 | -189 | 3.9 | TAGGAAACCTTTTCTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_3509 | -218 | 4 | AAGGAAACCTTTACTTACAC |
| Shewanella woodyi ATCC 51908 | Swoo_0911 | -178 | 3.7 | AAGGAAACCTTTTCTTACAT |
|
Position: -86
Score: 4.1 Sequence: ATGCAAATCTATATTGACCA
Locus tag: CPS_1583
|
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| CPS_1583 | -86 | 4.1 | ATGCAAATCTATATTGACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bkdA2 | ||||
| Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) | ||||
| Shewanella oneidensis MR-1 | SO_2340 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1886 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp W3-18-1 | Sputw3181_2122 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp ANA-3 | Shewana3_2130 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-4 | Shewmr4_2027 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-7 | Shewmr7_1948 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella baltica OS155 | Sbal_4507 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella denitrificans OS217 | Sden_1787 | -153 | 4.5 | GCGTAAAGCAAATTATACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1936 | -156 | 4.5 | TCGTAAAGCAATATATACAT |
| Shewanella amazonensis SB2B | Sama_1710 | -150 | 4.3 | CTGTAAAGCAATTAATACAT |
| Shewanella loihica PV-4 | Shew_1926 | -175 | 4.7 | TTGTAAAGCTAGCGATACAT |
| Shewanella pealeana ATCC 700345 | Spea_2245 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2233 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella piezotolerans WP3 | swp_2605 | -162 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella sediminis HAW-EB3 | Ssed_2328 | -172 | 4.4 | TTGTAAAGCTAAAGATACGC |
| Shewanella woodyi ATCC 51908 | Swoo_2279 | -171 | 4 | ATGTAAAGCTAAACATACGG |
|
Position: -123
Score: 3.9 Sequence: CCGTAAAGAAAATTTTCCGT
Locus tag: CPS_3763
|
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| CPS_3763 | -123 | 3.9 | CCGTAAAGAAAATTTTCCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgC | ||||
| Ortholog function: Fumarylacetoacetase (EC 3.7.1.2) | ||||
| Shewanella oneidensis MR-1 | SO_1670 | -323 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -239 | 4.3 | ACGTAATGATTAGTTTACAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1389 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp W3-18-1 | Sputw3181_2712 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp ANA-3 | Shewana3_2778 | -320 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -236 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-4 | Shewmr4_2604 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-7 | Shewmr7_2671 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella baltica OS155 | Sbal_1487 | -358 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -274 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella denitrificans OS217 | Sden_2592 | -228 | 4.1 | ATGTAACGAATTAGTGCCAT |
| -146 | 4.1 | TTGTACTGAAAAGTTTACAG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1331 | -155 | 4.9 | TTGTAACGAATAATTTACAA |
| Shewanella amazonensis SB2B | Sama_2219 | -234 | 4.3 | GTGTAAAAAGAATTTGCCAG |
| -150 | 4.4 | CTGTATTTAAAAGTTTACAA | ||
| Shewanella loihica PV-4 | Shew_1438 | -169 | 4.5 | CTGTCATGAATTGTTTACAA |
| Shewanella pealeana ATCC 700345 | Spea_1451 | -197 | 4.8 | GTGTATCTATAAGTTTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1534 | -183 | 4.7 | CTGTAAGTATAAGTTTACAA |
| Shewanella piezotolerans WP3 | swp_1653 | -179 | 4.8 | CTGTAATTATATGTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2927 | -238 | 4 | ATGTAAAAGCTTGTTGCCAC |
| -155 | 4 | GTGTAACTGTTTATTTACGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1718 | -256 | 4.2 | ATGTAACAAGAGATTGCCAC |
| -172 | 4.8 | CTGTAATTATTTATTTACAA | ||
|
Position: -96
Score: 4.6 Sequence: TCGTAAAAATTAGTTTACAA
Locus tag: CPS_3764
|
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| CPS_3764 | -96 | 4.6 | TCGTAAAAATTAGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Shewanella oneidensis MR-1 | SO_1669 | -190 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1388 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_2713 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp ANA-3 | Shewana3_2779 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-4 | Shewmr4_2605 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-7 | Shewmr7_2672 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella baltica OS155 | Sbal_1486 | -196 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella denitrificans OS217 | Sden_2593 | -155 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1330 | -92 | 4.7 | CTGTAAACTTCACTTGCCAC |
| Shewanella amazonensis SB2B | Sama_2220 | -134 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella loihica PV-4 | Shew_1437 | -162 | 4.7 | GTGTAAACAACTCTTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_1450 | -158 | 4.6 | CTGTAAACAAGTCTTGCCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1533 | -159 | 4.1 | CTGTAAACAAGCCTTGCCAC |
| Shewanella piezotolerans WP3 | swp_1652 | -309 | 4.6 | cTGTAAAcaagtCTTgcCAC |
| Shewanella sediminis HAW-EB3 | Ssed_2928 | -151 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_1717 | -161 | 4.6 | CTGTAAACAAGACTTGCCAC |