Propagation of TyrR regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog:	TyrR - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	TyrR
Regulation mode:	activator
Biological process:	Amino acid utilization
Effector:	Tyrosine; Phenylalanine
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Colwellia psychrerythraea 34H
Orthologous TF(s)	CPS_3764
Regulated genes	16

Built upon 312 sites [see more]

Predicted regulatory interactions in *Colwellia psychrerythraea 34H*
	Locus tag	Position	Score	Sequence
Position: -83 Score: 4.5 Sequence: TTGTAAAGCATACTTGACTT Position: -41 Score: 4.4 Sequence: AAGTCAAATAAACTTTACAA Locus tag: CPS_1160
	CPS_1160	-83	4.5	TTGTAAAGCATACTTGACTT
		-41	4.4	AAGTCAAATAAACTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3409
Ortholog function: hypothetical protein
Shewanella frigidimarina NCIMB 400	Sfri_3409	-99	4.7	AAGTAAAGCTTACTTGACAC
		-55	4.3	AAGTCAAGCTTAGTTGACAT
Shewanella loihica PV-4	Shew_3626	-90	4.4	ATGTAAAGCATGCTTGACCT
		-45	4.1	ATGTAAAGGGTGTTTGACAT
Shewanella pealeana ATCC 700345	Spea_0139	-106	3.9	AAGTAAAGCAAGCTTGACTT
		-62	4.2	AAGTCAAGCGTGCTTTACAT
Shewanella halifaxensis HAW-EB4	Shal_4179	-105	3.9	AAGTAAAGCATGCTTGACTT
		-61	4.5	AAGTCAAGCTTACTTTACAT
Shewanella piezotolerans WP3	swp_0181	-47	4.4	AAGTAAAGCTCACTTTACAA
Shewanella sediminis HAW-EB3	Ssed_4363	-111	3.9	AAGTAAAGCAAGCTTGACTT

Position: -284 Score: 3.6 Sequence: TTGTTAACTCAATGTTGCAA Locus tag: CPS_1170
	CPS_1170	-284	3.6	TTGTTAACTCAATGTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep3
Ortholog function: peptidase, M13 family
Shewanella oneidensis MR-1	SO_3844	-173	4.2	ATGGTAATTTTTAGTTACAA
Shewanella putrefaciens CN-32	Sputcn32_0791	-276	3.6	ATGTTAAGTTTATTTGCCTT
Shewanella sp W3-18-1	Sputw3181_3384	-276	3.6	ATGTTAAGTTTATTTGCCTT
Shewanella sp ANA-3	Shewana3_0759	-172	4.2	ATGGTAATTTTTAGTTACAA
Shewanella sp MR-4	Shewmr4_3179	-173	4.2	ATGGTAATTTTTAGTTACAA
Shewanella sp MR-7	Shewmr7_0787	-172	4.2	ATGGTAATTTTTAGTTACAA
Shewanella baltica OS155	Sbal_0685	-173	4	CTGGTAACCTTTAGTTACAT
Shewanella denitrificans OS217	Sden_1089	-224	3.8	TTGGTTACATAAATTGCCAG
Shewanella loihica PV-4	Shew_2973	-180	4.1	GAGGAAATCTTTACTTACAT
Shewanella pealeana ATCC 700345	Spea_3177	-237	3.8	TGGGAAACCTTTTCTTACAC
Shewanella halifaxensis HAW-EB4	Shal_3258	-202	3.9	TAGGAAACCTTTTCTTACAC
Shewanella piezotolerans WP3	swp_3866	-189	3.9	TAGGAAACCTTTTCTTACAC
Shewanella sediminis HAW-EB3	Ssed_3509	-218	4	AAGGAAACCTTTACTTACAC
Shewanella woodyi ATCC 51908	Swoo_0911	-178	3.7	AAGGAAACCTTTTCTTACAT

Position: -86 Score: 4.1 Sequence: ATGCAAATCTATATTGACCA Locus tag: CPS_1583
	CPS_1583	-86	4.1	ATGCAAATCTATATTGACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA2
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1	SO_2340	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32	Sputcn32_1886	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1	Sputw3181_2122	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella sp ANA-3	Shewana3_2130	-160	4.8	TTGTAAAGCATTATATACAT
Shewanella sp MR-4	Shewmr4_2027	-160	4.8	TTGTAAAGCATTATATACAT
Shewanella sp MR-7	Shewmr7_1948	-160	4.8	TTGTAAAGCATTATATACAT
Shewanella baltica OS155	Sbal_4507	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217	Sden_1787	-153	4.5	GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400	Sfri_1936	-156	4.5	TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B	Sama_1710	-150	4.3	CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4	Shew_1926	-175	4.7	TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345	Spea_2245	-161	4.8	ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4	Shal_2233	-161	4.8	ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3	swp_2605	-162	4.8	ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3	Ssed_2328	-172	4.4	TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908	Swoo_2279	-171	4	ATGTAAAGCTAAACATACGG

Position: -123 Score: 3.9 Sequence: CCGTAAAGAAAATTTTCCGT Locus tag: CPS_3763
	CPS_3763	-123	3.9	CCGTAAAGAAAATTTTCCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgC
Ortholog function: Fumarylacetoacetase (EC 3.7.1.2)
Shewanella oneidensis MR-1	SO_1670	-323	3.8	ATGTAACAGTATCGTTCCAC
		-239	4.3	ACGTAATGATTAGTTTACAG
Shewanella putrefaciens CN-32	Sputcn32_1389	-352	3.9	ATGTAACCGTATCGTTCCAC
		-268	4	ACGTAATGATTAGTTTACGA
Shewanella sp W3-18-1	Sputw3181_2712	-352	3.9	ATGTAACCGTATCGTTCCAC
		-268	4	ACGTAATGATTAGTTTACGA
Shewanella sp ANA-3	Shewana3_2778	-320	3.8	ATGTAACAGTATCGTTCCAC
		-236	4.4	ACGTAATGATTAGTTTACAA
Shewanella sp MR-4	Shewmr4_2604	-319	3.8	ATGTAACAGTATCGTTCCAC
		-235	4.4	ACGTAATGATTAGTTTACAA
Shewanella sp MR-7	Shewmr7_2671	-319	3.8	ATGTAACAGTATCGTTCCAC
		-235	4.4	ACGTAATGATTAGTTTACAA
Shewanella baltica OS155	Sbal_1487	-358	3.8	ATGTAACAGTATCGTTCCAC
		-274	4	ACGTAATGATTAGTTTACGA
Shewanella denitrificans OS217	Sden_2592	-228	4.1	ATGTAACGAATTAGTGCCAT
		-146	4.1	TTGTACTGAAAAGTTTACAG
Shewanella frigidimarina NCIMB 400	Sfri_1331	-155	4.9	TTGTAACGAATAATTTACAA
Shewanella amazonensis SB2B	Sama_2219	-234	4.3	GTGTAAAAAGAATTTGCCAG
		-150	4.4	CTGTATTTAAAAGTTTACAA
Shewanella loihica PV-4	Shew_1438	-169	4.5	CTGTCATGAATTGTTTACAA
Shewanella pealeana ATCC 700345	Spea_1451	-197	4.8	GTGTATCTATAAGTTTACAC
Shewanella halifaxensis HAW-EB4	Shal_1534	-183	4.7	CTGTAAGTATAAGTTTACAA
Shewanella piezotolerans WP3	swp_1653	-179	4.8	CTGTAATTATATGTTTACAA
Shewanella sediminis HAW-EB3	Ssed_2927	-238	4	ATGTAAAAGCTTGTTGCCAC
		-155	4	GTGTAACTGTTTATTTACGT
Shewanella woodyi ATCC 51908	Swoo_1718	-256	4.2	ATGTAACAAGAGATTGCCAC
		-172	4.8	CTGTAATTATTTATTTACAA

Position: -96 Score: 4.6 Sequence: TCGTAAAAATTAGTTTACAA Locus tag: CPS_3764
	CPS_3764	-96	4.6	TCGTAAAAATTAGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1	SO_1669	-190	4.7	CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32	Sputcn32_1388	-188	4.8	CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1	Sputw3181_2713	-188	4.8	CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3	Shewana3_2779	-205	4.7	CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4	Shewmr4_2605	-205	4.7	CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7	Shewmr7_2672	-205	4.7	CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155	Sbal_1486	-196	4.7	CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217	Sden_2593	-155	4.6	CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400	Sfri_1330	-92	4.7	CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B	Sama_2220	-134	4.6	CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4	Shew_1437	-162	4.7	GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345	Spea_1450	-158	4.6	CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4	Shal_1533	-159	4.1	CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3	swp_1652	-309	4.6	cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3	Ssed_2928	-151	4.6	CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908	Swoo_1717	-161	4.6	CTGTAAACAAGACTTGCCAC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TyrR regulog to Colwellia psychrerythraea 34H

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --