Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NtrC regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: NtrC - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) CPS_0397
Regulated genes 2
Built upon 94 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -42
Score: 5.7
Sequence: CGCACCAAAACGGTGCA
Locus tag: CPS_0398
CPS_0398 -42 5.7 CGCACCAAAACGGTGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ntrB
Ortholog function: nitrogen regulation protein
Shewanella oneidensis MR-1 SO_4471 -52 6 TGCACCAAATCGGTGCA
-39 4.9 TGCAACATAAGGGTGCA
Shewanella putrefaciens CN-32 Sputcn32_0372 -52 6 TGCACCAAATCGGTGCA
-39 5 TGCATCATGTTGATGCA
Shewanella sp W3-18-1 Sputw3181_0222 -52 6 TGCACCAAATCGGTGCA
-39 5 TGCATCATGTTGATGCA
Shewanella sp ANA-3 Shewana3_0259 -52 6 TGCACCAAATCGGTGCA
-39 5.5 TGCAACATAATGGTGCA
Shewanella sp MR-4 Shewmr4_0258 -52 6 TGCACCAAATCGGTGCA
-39 5.5 TGCAACATAATGGTGCA
Shewanella sp MR-7 Shewmr7_3763 -52 6 TGCACCAAATCGGTGCA
-39 5.5 TGCAACATAATGGTGCA
Shewanella baltica OS155 Sbal_0267 -52 5.5 TGCACCAGATTGGCGCA
-39 5.8 CGCACCATAGTGGTGCA
Shewanella denitrificans OS217 Sden_3457 -79 6 TGCACCATAGTGGTGCA
-52 5.8 TGCACCACAATGGTGCG
Shewanella frigidimarina NCIMB 400 Sfri_0321 -50 6.1 CGCACCAAATTGGTGCA
-37 5.7 TGCATCATAATGGTGCA
Shewanella amazonensis SB2B Sama_3426 -51 6.3 TGCACCATATTGGTGCA
-38 6.3 TGCACCATATTGGTGCA
Shewanella loihica PV-4 Shew_3560 -52 6.3 TGCACCAAATTGGTGCA
-39 6.2 TGCACCATTATGGTGCA
Shewanella pealeana ATCC 700345 Spea_3929 -79 6 TGCACCATTTCGGTGCA
Shewanella halifaxensis HAW-EB4 Shal_0342 -79 6 TGCACCACTTTGGTGCA
-66 5.8 TGCACCATAGTGGTGCG
Shewanella piezotolerans WP3 swp_0250 -79 6.1 CGCACCATTTTGGTGCA
-66 6 TGCACCATAGTGGTGCA
-39 4.8 CGTTCCAAAATGGTGCA
Shewanella sediminis HAW-EB3 Ssed_0283 -51 6.3 TGCACCAATTTGGTGCA
-38 6 TGCACCATGATGGTGCA
Shewanella woodyi ATCC 51908 Swoo_4650 -51 5.6 TGCACTAGTTTGGTGCA
-38 6.2 TGCACCATAATGGTGCA
Position: -139
Score: 4.8
Sequence: TGCACGCTCTTGGTGCG
Locus tag: CPS_0641
CPS_0641 -139 4.8 TGCACGCTCTTGGTGCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnB
Ortholog function: nitrogen regulatory protein P-II 1
Shewanella oneidensis MR-1 SO_0761 -142 5.5 TGCACAATTCTGGTGCA
Shewanella putrefaciens CN-32 Sputcn32_3241 -143 5.5 TGCACAAATGTGGTGCA
Shewanella sp W3-18-1 Sputw3181_0700 -143 5.5 TGCACAAATGTGGTGCA
Shewanella sp ANA-3 Shewana3_3532 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella sp MR-4 Shewmr4_3362 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella sp MR-7 Shewmr7_0591 -143 5.2 TGCACAAGTCTGGTGCA
Shewanella baltica OS155 Sbal_0797 -144 5.1 TGCTCGATCATGGTGCA
Shewanella denitrificans OS217 Sden_2905 -195 5.2 TGCGCCACTTAGGTGCA
-152 5.7 CGCACCTTATTGGTGCA
Shewanella frigidimarina NCIMB 400 Sfri_0623 -183 5.4 TGCACCAAAACGATGCA
Shewanella amazonensis SB2B Sama_0650 -172 5.6 TGCACCACCTTGGTGCG
-142 4.7 TGCACTTTTTTTGTGCG
Shewanella loihica PV-4 Shew_0846 -172 4.5 TGCGCTATTTTTGTGCG
-142 5.8 CGCACCTAATTGGTGCA
Shewanella pealeana ATCC 700345 Spea_0833 -135 5.5 TGCACCTTGCTGGTGCA
Shewanella halifaxensis HAW-EB4 Shal_0888 -137 4.7 CGCACTCGAATGGTGCA
Shewanella piezotolerans WP3 swp_3956 -136 5.4 TGCACCCGATTGGTGCA
Shewanella sediminis HAW-EB3 Ssed_0933 -151 5.1 CGCACTTGTTTGGTGCA
Shewanella woodyi ATCC 51908 Swoo_0979 -173 4.6 TGCGCTAATTCCGTGCA
-143 5.4 CGCACCTTAATGGTGCG
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