Propagation of NagR regulog to Shewanella sp MR-7
| Source regulog: | NagR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sp MR-7 |
| Orthologous TF(s) | Shewmr7_3025 |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -300
Score: 5.2 Sequence: TTTGACAGCGCTGTCTTT
Locus tag: Shewmr7_0947
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| Shewmr7_0947 | -300 | 5.2 | TTTGACAGCGCTGTCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cbp | ||||
| Ortholog function: Chitn and N-acetylglucosamine-binding protein A | ||||
| Shewanella oneidensis MR-1 | SO_1072 | -304 | 5.6 | TTTGACAACGTTGTCTTT |
| Shewanella sp MR-4 | Shewmr4_3027 | -300 | 5.4 | TTTGACAACGCTGTCTTT |
| Shewanella sp MR-7 | Shewmr7_0947 | -300 | 5.2 | TTTGACAGCGCTGTCTTT |
| Shewanella baltica OS155 | Sbal_0896 | -309 | 5.4 | TTTGACAGCGTTGTCTTT |
| Shewanella denitrificans OS217 | Sden_1030 | -183 | 5.2 | TTTGACAGCGCTGTCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_3879 | -311 | 5.9 | ATTGACAGCGTTATCATT |
|
Position: -212
Score: 6.6 Sequence: AATGACAACGTTGTCATT
Locus tag: Shewmr7_2888
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| Shewmr7_2888 | -212 | 6.6 | AATGACAACGTTGTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chiA | ||||
| Ortholog function: Chitinase (EC 3.2.1.14) | ||||
| Shewanella sp ANA-3 | Shewana3_2984 | -214 | 6.6 | AATGACAACGTTGTCATT |
| Shewanella sp MR-4 | Shewmr4_2805 | -212 | 6.6 | AATGACAACGTTGTCATT |
| Shewanella sp MR-7 | Shewmr7_2888 | -212 | 6.6 | AATGACAACGTTGTCATT |
| Shewanella baltica OS155 | Sbal_3083 | -221 | 6.6 | AATGACAACGTTGTCATT |
| Shewanella denitrificans OS217 | Sden_2136 | -212 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella piezotolerans WP3 | swp_0647 | -249 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella woodyi ATCC 51908 | Swoo_1100 | -306 | 6.4 | GATGACAGCGTTGTCATC |
|
Position: -178
Score: 6.1 Sequence: AATGACAGCGTTGTCTTT
Locus tag: Shewmr7_3013
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| Shewmr7_3013 | -178 | 6.1 | AATGACAGCGTTGTCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagP | ||||
| Ortholog function: N-acetylglucosamine transporter, NagP | ||||
| Shewanella oneidensis MR-1 | SO_3503 | -175 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1080 | -179 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp W3-18-1 | Sputw3181_3084 | -179 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp ANA-3 | Shewana3_3110 | -177 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp MR-4 | Shewmr4_2931 | -178 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp MR-7 | Shewmr7_3013 | -178 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella baltica OS155 | Sbal_1088 | -179 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella denitrificans OS217 | Sden_2702 | -138 | 5.6 | AATGACAGCGTTGTCTTA |
| Shewanella amazonensis SB2B | Sama_0948 | -167 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella loihica PV-4 | Shew_1119 | -186 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella pealeana ATCC 700345 | Spea_1104 | -198 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1152 | -199 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella piezotolerans WP3 | swp_3698 | -177 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1215 | -168 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1315 | -172 | 6.1 | AATGACAGCGTTGTCTTT |
|
Position: -114
Score: 6.4 Sequence: AATGACAACGCTGTCATT
Locus tag: Shewmr7_3017
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| Shewmr7_3017 | -114 | 6.4 | AATGACAACGCTGTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagK | ||||
| Ortholog function: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) | ||||
| Shewanella oneidensis MR-1 | SO_3507 | -115 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1076 | -90 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella sp W3-18-1 | Sputw3181_3089 | -90 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella sp ANA-3 | Shewana3_3114 | -114 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella sp MR-4 | Shewmr4_2935 | -114 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella sp MR-7 | Shewmr7_3017 | -114 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella baltica OS155 | Sbal_1084 | -113 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella denitrificans OS217 | Sden_2706 | -101 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella amazonensis SB2B | Sama_0944 | -105 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella loihica PV-4 | Shew_1116 | -106 | 6.4 | AATGACAGCGTTGTCATT |
| Shewanella pealeana ATCC 700345 | Spea_1101 | -123 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1149 | -124 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella piezotolerans WP3 | swp_3703 | -106 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella sediminis HAW-EB3 | Ssed_1212 | -106 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella woodyi ATCC 51908 | Swoo_1312 | -108 | 6.4 | AATGACAACGCTGTCATT |
|
Position: -294
Score: 6.4 Sequence: AATGACAACGCTGTCATC
Locus tag: Shewmr7_3020
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| Shewmr7_3020 | -294 | 6.4 | AATGACAACGCTGTCATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pilM | ||||
| Ortholog function: homolog of type IV pilus assembly protein PilM | ||||
| Shewanella sp ANA-3 | Shewana3_3117 | -294 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella sp MR-4 | Shewmr4_2938 | -294 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella sp MR-7 | Shewmr7_3020 | -294 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella baltica OS155 | Sbal_1081 | -304 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella amazonensis SB2B | Sama_0941 | -282 | 6.4 | AATGACAGCGTTGTCATT |
| Shewanella piezotolerans WP3 | swp_3707 | -277 | 5.9 | TATGACAGCGTTGTCATC |
| Shewanella woodyi ATCC 51908 | Swoo_1309 | -311 | 6.4 | AATGACAGCGTTGTCATC |
|
Position: -214
Score: 6.4 Sequence: GATGACAGCGTTGTCATT
Position: -68
Score: 5.2 Sequence: TGTGACAACGCTGTCTTT
Locus tag: Shewmr7_3021
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| Shewmr7_3021 | -214 | 6.4 | GATGACAGCGTTGTCATT | |
| -68 | 5.2 | TGTGACAACGCTGTCTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: duf81 | ||||
| Ortholog function: protein of unknown function DUF81 | ||||
| Shewanella sp ANA-3 | Shewana3_3118 | -66 | 5.2 | TGTGACAACGCTGTCTTT |
| Shewanella sp MR-4 | Shewmr4_2939 | -68 | 5 | TGTGACAACGCTGTCCTT |
| Shewanella sp MR-7 | Shewmr7_3021 | -68 | 5.2 | TGTGACAACGCTGTCTTT |
| Shewanella baltica OS155 | Sbal_1080 | -210 | 6.4 | GATGACAGCGTTGTCATT |
| -64 | 5.4 | TGTGACAACGTTGTCTTT | ||
| Shewanella piezotolerans WP3 | swp_3708 | -129 | 5.4 | AATGACAACGCTGTCTAA |
| Shewanella woodyi ATCC 51908 | Swoo_1308 | -92 | 5.7 | TATGACAACGCTGTCAAT |
|
Position: -74
Score: 6.2 Sequence: CATGACAGCGTTGTCATT
Locus tag: Shewmr7_3024
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| Shewmr7_3024 | -74 | 6.2 | CATGACAGCGTTGTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp_nag | ||||
| Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor | ||||
| Shewanella oneidensis MR-1 | SO_3514 | -74 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1074 | -75 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella sp W3-18-1 | Sputw3181_3091 | -75 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella sp MR-7 | Shewmr7_3024 | -348 | 5.1 | GCCGACAGCGTTGTCAGC |
| -74 | 6.2 | CATGACAGCGTTGTCATT | ||
| Shewanella loihica PV-4 | Shew_1112 | -76 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1145 | -78 | 6.2 | CATGACAGCGTTGTCATT |
|
Position: -96
Score: 5.1 Sequence: GCTGACAACGCTGTCGGC
Locus tag: Shewmr7_3025
|
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| Shewmr7_3025 | -96 | 5.1 | GCTGACAACGCTGTCGGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagR | ||||
| Ortholog function: Transcriptional regulator of N-acetylglucosamine utilization, LacI family | ||||
| Shewanella sp ANA-3 | Shewana3_3122 | -96 | 5.1 | GCTGACAACGCTGTCGGC |
| Shewanella sp MR-4 | Shewmr4_2943 | -96 | 5.1 | GCTGACAACGCTGTCGGC |
| Shewanella sp MR-7 | Shewmr7_3025 | -96 | 5.1 | GCTGACAACGCTGTCGGC |
| Shewanella denitrificans OS217 | Sden_2709 | -301 | 6.2 | AATGACAACGCTGTCATG |
|
Position: -91
Score: 5.4 Sequence: TATGACAACGTTGTCAAA
Locus tag: Shewmr7_3312
|
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| Shewmr7_3312 | -91 | 5.4 | TATGACAACGTTGTCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0854 | ||||
| Ortholog function: Type IV pilus biogenesis protein PilE | ||||
| Shewanella oneidensis MR-1 | SO_0854 | -83 | 5.7 | CATGACAACGTTGTCAAA |
| Shewanella sp ANA-3 | Shewana3_3424 | -91 | 5.4 | TATGACAACGTTGTCAAA |
| Shewanella sp MR-4 | Shewmr4_0710 | -91 | 5.4 | TATGACAACGTTGTCAAA |
| Shewanella sp MR-7 | Shewmr7_3312 | -91 | 5.4 | TATGACAACGTTGTCAAA |