Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of AraR regulog to Shewanella sp MR-7

Reference regulog properties
Source regulog: AraR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp MR-7
Orthologous TF(s) Shewmr7_1993
Regulated genes 4
Built upon 30 sites [see more]
Predicted regulatory interactions in Shewanella sp MR-7
Locus tag Position Score Sequence
Position: -85
Score: 5.8
Sequence: CAGTAGTATTGTATTACTT
Locus tag: Shewmr7_1976
Shewmr7_1976 -85 5.8 CAGTAGTATTGTATTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: abnA
Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Shewanella putrefaciens CN-32 Sputcn32_2047 -88 5.4 CAGTAGTATTGTATTACAT
Shewanella sp W3-18-1 Sputw3181_1965 -88 5.4 CAGTAGTATTGTATTACAT
Shewanella sp ANA-3 Shewana3_2086 -85 5.8 CAGTAGTATTGTATTACTT
Shewanella sp MR-4 Shewmr4_1999 -85 5.8 CAGTAGTATTGTATTACTT
Shewanella sp MR-7 Shewmr7_1976 -85 5.8 CAGTAGTATTGTATTACTT
Position: -150
Score: 6
Sequence: TGGTATTATAGTAATACCA
Locus tag: Shewmr7_1991
Shewmr7_1991 -150 6 TGGTATTATAGTAATACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araC
Ortholog function: L-arabonate dehydratase (EC 4.2.1.25)
Shewanella putrefaciens CN-32 Sputcn32_2062 -178 6.1 TAGTATTATAGTAATACCA
Shewanella sp W3-18-1 Sputw3181_1950 -178 6.1 TAGTATTATAGTAATACCA
Shewanella sp ANA-3 Shewana3_2070 -123 6 TGGTATTATAGTAATACCA
Shewanella sp MR-4 Shewmr4_1983 -150 6 TGGTATTATAGTAATACCA
Shewanella sp MR-7 Shewmr7_1991 -150 6 TGGTATTATAGTAATACCA
Position: -45
Score: 6
Sequence: TGGTATTACTATAATACCA
Locus tag: Shewmr7_1992
Shewmr7_1992 -45 6 TGGTATTACTATAATACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arb43
Ortholog function: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
Shewanella putrefaciens CN-32 Sputcn32_2063 -45 6.1 TGGTATTACTATAATACTA
Shewanella sp W3-18-1 Sputw3181_1949 -45 6.1 TGGTATTACTATAATACTA
Shewanella sp ANA-3 Shewana3_2069 -45 6 TGGTATTACTATAATACCA
Shewanella sp MR-4 Shewmr4_1982 -45 6 TGGTATTACTATAATACCA
Shewanella sp MR-7 Shewmr7_1992 -45 6 TGGTATTACTATAATACCA
Position: -81
Score: 6.1
Sequence: TAGTAATATTGTAGTACTA
Locus tag: Shewmr7_1997
Shewmr7_1997 -81 6.1 TAGTAATATTGTAGTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Shewanella sp ANA-3 Shewana3_2064 -108 4.8 AAATCATATTGTATTACTA
-81 6.1 TAGTAATATTGTAGTACTA
Shewanella sp MR-4 Shewmr4_1977 -108 4.8 AAATCATATTGTATTACTA
-81 6.1 TAGTAATATTGTAGTACTA
Shewanella sp MR-7 Shewmr7_1997 -108 4.8 AAATCATATTGTATTACTA
-81 6.1 TAGTAATATTGTAGTACTA
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