Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Fur regulog to Idiomarina loihiensis L2TR

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Idiomarina loihiensis L2TR
Orthologous TF(s) IL1476
Regulated genes 11
Built upon 505 sites [see more]
Predicted regulatory interactions in Idiomarina loihiensis L2TR
Locus tag Position Score Sequence
Position: -73
Score: 5.5
Sequence: AAATGCAAATCATTTTCGTTT
Locus tag: IL0112
IL0112 -73 5.5 AAATGCAAATCATTTTCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0719
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO0719 -40 4.9 AGGTAGGAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_2929 -43 5.8 AAAAGAGAATAATTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3020 -42 5.8 AAAGGAGAATAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_3638 -42 5.5 TAAGGATAATAATTCTCATTA
Position: -87
Score: 5.5
Sequence: AAACGAAAATGATTTGCATTT
Locus tag: IL0113
IL0113 -87 5.5 AAACGAAAATGATTTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmuB
Ortholog function: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Shewanella oneidensis MR-1 SO3673 -97 5.7 AAATAGAAATCATTATCATTT
Shewanella putrefaciens CN-32 Sputcn32_0962 -31 5.2 AAATGATAATTATCATGATTA
Shewanella sp ANA-3 Shewana3_3239 -98 6 AAATGGAAATCATTATCATTT
Shewanella denitrificans OS217 Sden_0786 -66 6.5 AAATGAAAATCATTATCATTT
Shewanella pealeana ATCC 700345 Spea_3331 -206 6.5 AAATGAAAATCATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_3403 -207 6.5 AAATGAAAATCATTATCATTT
Shewanella piezotolerans WP3 swp_3982 -183 6.5 AAATGAAAATCATTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4008 -80 6.5 AAATGAAAATCATTATCATTT
Position: -66
Score: 5.2
Sequence: AAATGATAACGATTCGTAGTT
Locus tag: IL1581
IL1581 -66 5.2 AAATGATAACGATTCGTAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_3863
Ortholog function: TonB-dependent siderophore receptor
Shewanella putrefaciens CN-32 Sputcn32_3863 -21 5.3 AAATGAAAACTATTCGTAATA
Shewanella sp W3-18-1 Sputw3181_0090 -21 5.3 AAATGAAAACTATTCGTAATA
Shewanella sp ANA-3 Shewana3_0952 -63 5.2 AAATGCAAATCGTTCTCAATG
Shewanella sp MR-4 Shewmr4_0950 -57 5.6 AAATGCAAATCGTTCTCAATA
Shewanella sp MR-7 Shewmr7_0988 -57 5.6 AAATGCAAATCGTTCTCAATA
Shewanella baltica OS155 Sbal_2136 -63 4.8 AAATAAAAGTGATTCGCAATA
Position: -88
Score: 5.5
Sequence: TATTGCGAATCATTCTTATTT
Locus tag: IL2393
IL2393 -88 5.5 TATTGCGAATCATTCTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0590
Ortholog function: TonB-dependent receptor
Shewanella sp MR-4 Shewmr4_0630 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella sp MR-7 Shewmr7_3399 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella amazonensis SB2B Sama_0590 -2 5.9 AAATGATAACTATTGTCATTA
Shewanella pealeana ATCC 700345 Spea_0713 -66 5.5 AAATGATAATCAATCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_0766 -67 5.6 AAATGAGAATGAATAGCATTA
Shewanella sediminis HAW-EB3 Ssed_3888 -84 5.5 AAATGATAACCACTCTCATTA
Shewanella woodyi ATCC 51908 Swoo_3787 -2 5.5 AAATGATAATCAATCCCATTA
Position: -42
Score: 6
Sequence: TAATGAAAATAATTCGCATTT
Locus tag: IL2490
IL2490 -42 6 TAATGAAAATAATTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: irgA
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO_4523 -50 6.1 TATTGAAAATTATTATCATTT
Shewanella putrefaciens CN-32 Sputcn32_3503 -52 5.9 TATTGAAAATTGTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_0403 -52 5.9 TATTGAAAATTGTTCTCATTT
Shewanella sp ANA-3 Shewana3_3929 -49 6.1 TATTGAAAATTATTATCATTT
Shewanella baltica OS155 Sbal_0217 -52 5.9 TATTGAAAATTGTTCTCATTT
Position: -89
Score: 5.9
Sequence: AAATGAGAATTTTTATCATTA
Position: -60
Score: 5.5
Sequence: AAATGAGAACGGTTTTTATAT
Locus tag: IL2502
IL2502 -89 5.9 AAATGAGAATTTTTATCATTA
-60 5.5 AAATGAGAACGGTTTTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1188
Ortholog function: Inner membrane protein with PepSY TM helix
Shewanella oneidensis MR-1 SO1188 -185 5.4 TTTTGATAATAAATATCATTT
Shewanella putrefaciens CN-32 Sputcn32_2850 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp W3-18-1 Sputw3181_1054 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp ANA-3 Shewana3_1014 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-4 Shewmr4_1010 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-7 Shewmr7_1075 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella baltica OS155 Sbal_3255 -45 5.4 ATTTGATAATCGATCTCATTT
Shewanella denitrificans OS217 Sden_2152 -58 5.8 TATTGAGATTCATTATCATTT
Shewanella amazonensis SB2B Sama_2808 -73 4.8 TGGTGAGAATTACTCTCAATT
Shewanella piezotolerans WP3 swp_3069 -102 4.3 TGATCATAATTGTTTTAAATC
Position: -85
Score: 5.4
Sequence: AAATGAGAATTGTTCGCAACA
Locus tag: IL2512
IL2512 -85 5.4 AAATGAGAATTGTTCGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: COG3182
Ortholog function: PepSY-associated TM helix domain-containing protein
Shewanella putrefaciens CN-32 Sputcn32_1842 -90 5.7 AATTGAAAACAATTATCAATA
-64 5.2 TATTGATAACAATTCGTATTA
Shewanella sp W3-18-1 Sputw3181_2167 -90 5.7 AATTGAAAACAATTATCAATA
-64 5.2 TATTGATAACAATTCGTATTA
Shewanella sp ANA-3 Shewana3_2196 -66 5.5 TATTGATAACAATTCGCATTA
Shewanella sp MR-4 Shewmr4_2076 -65 5.5 TATTGATAACAATTCGCATTA
Shewanella sp MR-7 Shewmr7_1899 -65 5.5 TATTGATAACAATTCGCATTA
Shewanella baltica OS155 Sbal_2134 -64 5.4 TATTGATAACAATTTGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_2548 -184 5.6 TATTGCTAATGATTATCATTA
-107 5.5 AATTGATAATAATTATCACTC
-80 5 TATTGAGATTCGTTATCAATC
Position: -67
Score: 4.6
Sequence: TAATAATACGTATTTTCATTC
Locus tag: IL2563
IL2563 -67 4.6 TAATAATACGTATTTTCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_2703
Ortholog function: Cytochrome B561
Shewanella putrefaciens CN-32 Sputcn32_2703 -60 4.6 TTATGATAATGGATATTGTTT
Shewanella sp W3-18-1 Sputw3181_1308 -60 4.6 TTATGATAATGGATATTGTTT
Shewanella sp ANA-3 Shewana3_1178 -59 5 TTATGATAATGACTATTATTT
Shewanella sp MR-4 Shewmr4_1177 -59 5 TTATGATAATGACTATTATTT
Shewanella sp MR-7 Shewmr7_1248 -59 5 TTATGATAATGACTATTATTT
Shewanella baltica OS155 Sbal_3042 -61 5.3 TTATGATAATGAATATTATTT
Shewanella amazonensis SB2B Sama_0949 -38 5.4 AGATGAAAACCATTCTCGTTA
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