Propagation of Fur regulog to Idiomarina loihiensis L2TR
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Idiomarina loihiensis L2TR |
| Orthologous TF(s) | IL1476 |
| Regulated genes | 11 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -73
Score: 5.5 Sequence: AAATGCAAATCATTTTCGTTT
Locus tag: IL0112
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| IL0112 | -73 | 5.5 | AAATGCAAATCATTTTCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0719 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO0719 | -40 | 4.9 | AGGTAGGAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2929 | -43 | 5.8 | AAAAGAGAATAATTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3020 | -42 | 5.8 | AAAGGAGAATAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3638 | -42 | 5.5 | TAAGGATAATAATTCTCATTA |
|
Position: -87
Score: 5.5 Sequence: AAACGAAAATGATTTGCATTT
Locus tag: IL0113
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| IL0113 | -87 | 5.5 | AAACGAAAATGATTTGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmuB | ||||
| Ortholog function: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB | ||||
| Shewanella oneidensis MR-1 | SO3673 | -97 | 5.7 | AAATAGAAATCATTATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0962 | -31 | 5.2 | AAATGATAATTATCATGATTA |
| Shewanella sp ANA-3 | Shewana3_3239 | -98 | 6 | AAATGGAAATCATTATCATTT |
| Shewanella denitrificans OS217 | Sden_0786 | -66 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_3331 | -206 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3403 | -207 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_3982 | -183 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4008 | -80 | 6.5 | AAATGAAAATCATTATCATTT |
|
Position: -66
Score: 5.2 Sequence: AAATGATAACGATTCGTAGTT
Locus tag: IL1581
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| IL1581 | -66 | 5.2 | AAATGATAACGATTCGTAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_3863 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3863 | -21 | 5.3 | AAATGAAAACTATTCGTAATA |
| Shewanella sp W3-18-1 | Sputw3181_0090 | -21 | 5.3 | AAATGAAAACTATTCGTAATA |
| Shewanella sp ANA-3 | Shewana3_0952 | -63 | 5.2 | AAATGCAAATCGTTCTCAATG |
| Shewanella sp MR-4 | Shewmr4_0950 | -57 | 5.6 | AAATGCAAATCGTTCTCAATA |
| Shewanella sp MR-7 | Shewmr7_0988 | -57 | 5.6 | AAATGCAAATCGTTCTCAATA |
| Shewanella baltica OS155 | Sbal_2136 | -63 | 4.8 | AAATAAAAGTGATTCGCAATA |
|
Position: -88
Score: 5.5 Sequence: TATTGCGAATCATTCTTATTT
Locus tag: IL2393
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| IL2393 | -88 | 5.5 | TATTGCGAATCATTCTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0590 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella sp MR-4 | Shewmr4_0630 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella sp MR-7 | Shewmr7_3399 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella amazonensis SB2B | Sama_0590 | -2 | 5.9 | AAATGATAACTATTGTCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0713 | -66 | 5.5 | AAATGATAATCAATCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0766 | -67 | 5.6 | AAATGAGAATGAATAGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3888 | -84 | 5.5 | AAATGATAACCACTCTCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3787 | -2 | 5.5 | AAATGATAATCAATCCCATTA |
|
Position: -42
Score: 6 Sequence: TAATGAAAATAATTCGCATTT
Locus tag: IL2490
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| IL2490 | -42 | 6 | TAATGAAAATAATTCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: irgA | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO_4523 | -50 | 6.1 | TATTGAAAATTATTATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3503 | -52 | 5.9 | TATTGAAAATTGTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0403 | -52 | 5.9 | TATTGAAAATTGTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_3929 | -49 | 6.1 | TATTGAAAATTATTATCATTT |
| Shewanella baltica OS155 | Sbal_0217 | -52 | 5.9 | TATTGAAAATTGTTCTCATTT |
|
Position: -89
Score: 5.9 Sequence: AAATGAGAATTTTTATCATTA
Position: -60
Score: 5.5 Sequence: AAATGAGAACGGTTTTTATAT
Locus tag: IL2502
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| IL2502 | -89 | 5.9 | AAATGAGAATTTTTATCATTA | |
| -60 | 5.5 | AAATGAGAACGGTTTTTATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1188 | ||||
| Ortholog function: Inner membrane protein with PepSY TM helix | ||||
| Shewanella oneidensis MR-1 | SO1188 | -185 | 5.4 | TTTTGATAATAAATATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2850 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_1054 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp ANA-3 | Shewana3_1014 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-4 | Shewmr4_1010 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-7 | Shewmr7_1075 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella baltica OS155 | Sbal_3255 | -45 | 5.4 | ATTTGATAATCGATCTCATTT |
| Shewanella denitrificans OS217 | Sden_2152 | -58 | 5.8 | TATTGAGATTCATTATCATTT |
| Shewanella amazonensis SB2B | Sama_2808 | -73 | 4.8 | TGGTGAGAATTACTCTCAATT |
| Shewanella piezotolerans WP3 | swp_3069 | -102 | 4.3 | TGATCATAATTGTTTTAAATC |
|
Position: -85
Score: 5.4 Sequence: AAATGAGAATTGTTCGCAACA
Locus tag: IL2512
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| IL2512 | -85 | 5.4 | AAATGAGAATTGTTCGCAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: COG3182 | ||||
| Ortholog function: PepSY-associated TM helix domain-containing protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1842 | -90 | 5.7 | AATTGAAAACAATTATCAATA |
| -64 | 5.2 | TATTGATAACAATTCGTATTA | ||
| Shewanella sp W3-18-1 | Sputw3181_2167 | -90 | 5.7 | AATTGAAAACAATTATCAATA |
| -64 | 5.2 | TATTGATAACAATTCGTATTA | ||
| Shewanella sp ANA-3 | Shewana3_2196 | -66 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella sp MR-4 | Shewmr4_2076 | -65 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella sp MR-7 | Shewmr7_1899 | -65 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella baltica OS155 | Sbal_2134 | -64 | 5.4 | TATTGATAACAATTTGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2548 | -184 | 5.6 | TATTGCTAATGATTATCATTA |
| -107 | 5.5 | AATTGATAATAATTATCACTC | ||
| -80 | 5 | TATTGAGATTCGTTATCAATC | ||
|
Position: -67
Score: 4.6 Sequence: TAATAATACGTATTTTCATTC
Locus tag: IL2563
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| IL2563 | -67 | 4.6 | TAATAATACGTATTTTCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_2703 | ||||
| Ortholog function: Cytochrome B561 | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2703 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1308 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp ANA-3 | Shewana3_1178 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-4 | Shewmr4_1177 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-7 | Shewmr7_1248 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella baltica OS155 | Sbal_3042 | -61 | 5.3 | TTATGATAATGAATATTATTT |
| Shewanella amazonensis SB2B | Sama_0949 | -38 | 5.4 | AGATGAAAACCATTCTCGTTA |