Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SoxR regulog to Idiomarina loihiensis L2TR

Reference regulog properties
Source regulog: SoxR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Superoxide stress response
Effector: Paraquat
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Idiomarina loihiensis L2TR
Orthologous TF(s) IL0801
Regulated genes 1
Built upon 12 sites [see more]
Predicted regulatory interactions in Idiomarina loihiensis L2TR
Locus tag Position Score Sequence
Position: -32
Score: 6.2
Sequence: ACTTAAAGTTAACTTTAGGT
Locus tag: IL0801
IL0801 -32 6.2 ACTTAAAGTTAACTTTAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: Redox-sensitive transcriptional activator, MerR family
Shewanella amazonensis SB2B Sama_3347 -32 6.2 ACTTCAAGTCAACTTGAGGT
Shewanella loihica PV-4 Shew_0423 -32 5.7 ACTTCAAGTCGACTTGAGGT
Shewanella woodyi ATCC 51908 Swoo_3439 -113 4.4 AgtTaAAGTcgACTTtAaGT
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