Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FabR regulog to Idiomarina loihiensis L2TR

Reference regulog properties
Source regulog: FabR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Idiomarina loihiensis L2TR
Orthologous TF(s) IL0277
Regulated genes 3
Built upon 118 sites [see more]
Predicted regulatory interactions in Idiomarina loihiensis L2TR
Locus tag Position Score Sequence
Position: -112
Score: 6.5
Sequence: AGCGTACACCTGTACGCT
Locus tag: IL0277
IL0277 -112 6.5 AGCGTACACCTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabR
Ortholog function: Unsaturated fatty acid biosythesis repressor FabR, TetR family
Shewanella oneidensis MR-1 SO_0198 -119 6.3 AGCGTACAGCTGTAAGCT
Shewanella putrefaciens CN-32 Sputcn32_3541 -119 6.2 AGCGTACATCTGTAAGCT
Shewanella sp W3-18-1 Sputw3181_3678 -119 6.2 AGCGTACATCTGTAAGCT
Shewanella sp ANA-3 Shewana3_0178 -119 6.2 AGCGTACAACTGTAAGCT
Shewanella sp MR-4 Shewmr4_0177 -119 6.2 AGCGTACAACTGTAAGCT
Shewanella sp MR-7 Shewmr7_0172 -119 6.2 AGCGTACAACTGTAAGCT
Shewanella baltica OS155 Sbal_4180 -119 6.2 AGCGTACATCTGTAAGCT
Shewanella denitrificans OS217 Sden_0230 -121 6.2 AGCGTACATCTGTAAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0124 -121 6.2 AGCGTACAATTGTACGCT
Shewanella amazonensis SB2B Sama_0192 -119 6.3 AGCGTACAGCTGTAAGCT
Shewanella loihica PV-4 Shew_0137 -114 6 AGCGTACAGCTGTAAGCC
Shewanella halifaxensis HAW-EB4 Shal_4155 -55 6.3 AGCGTACATCTGTACGCT
Shewanella piezotolerans WP3 swp_0205 -118 6.4 AGCGTACAGCTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_4339 -129 6.3 AGCGTACATCTGTACGCT
Shewanella woodyi ATCC 51908 Swoo_4711 -128 6.3 AGCGTACATCTGTACGCT
Position: -59
Score: 6.5
Sequence: AGCGTACAGGTGTACGCT
Locus tag: IL0278
IL0278 -59 6.5 AGCGTACAGGTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: OLE1
Ortholog function: Fatty acid desaturase (EC 1.14.19.1)
Shewanella oneidensis MR-1 SO_0197 -42 6.3 AGCTTACAGCTGTACGCT
Shewanella putrefaciens CN-32 Sputcn32_3542 -43 6.2 AGCTTACAGATGTACGCT
Shewanella sp W3-18-1 Sputw3181_3679 -43 6.2 AGCTTACAGATGTACGCT
Shewanella sp ANA-3 Shewana3_0177 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella sp MR-4 Shewmr4_0176 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella sp MR-7 Shewmr7_0171 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella baltica OS155 Sbal_4181 -43 6.2 AGCTTACAGATGTACGCT
Shewanella denitrificans OS217 Sden_0229 -41 6.2 AGCTTACAGATGTACGCT
Shewanella frigidimarina NCIMB 400 Sfri_0123 -53 6.2 AGCGTACAATTGTACGCT
Shewanella amazonensis SB2B Sama_0191 -29 6.3 AGCTTACAGCTGTACGCT
Shewanella loihica PV-4 Shew_0136 -43 6 GGCTTACAGCTGTACGCT
Shewanella pealeana ATCC 700345 Spea_0162 -9 6 GGCGTACAGATGTACGCT
Shewanella halifaxensis HAW-EB4 Shal_4156 -40 6.3 AGCGTACAGATGTACGCT
Shewanella piezotolerans WP3 swp_0204 -40 6.4 AGCGTACAGCTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_4340 -41 6.3 AGCGTACAGATGTACGCT
Shewanella woodyi ATCC 51908 Swoo_4712 -41 6.3 AGCGTACAGATGTACGCT
Position: -59
Score: 6
Sequence: GGCGTACAGTTGTACGCT
Locus tag: IL1287
IL1287 -59 6 GGCGTACAGTTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabA
Ortholog function: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Shewanella oneidensis MR-1 SO_1856 -53 6.3 AGCTTACACGTGTTCGCT
Shewanella putrefaciens CN-32 Sputcn32_1637 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp W3-18-1 Sputw3181_2388 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp ANA-3 Shewana3_1606 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp MR-4 Shewmr4_1545 -53 6.3 AGCTTACACGTGTTCGCT
Shewanella sp MR-7 Shewmr7_1612 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella baltica OS155 Sbal_2565 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella denitrificans OS217 Sden_2465 -60 6.3 AGCGTACACCTGTTCGCT
Shewanella frigidimarina NCIMB 400 Sfri_2656 -60 6.3 AGCTTACACGTGTTCGCT
Shewanella amazonensis SB2B Sama_1605 -58 6 GGCGTACAGGTGTTCGCT
Shewanella loihica PV-4 Shew_1817 -55 6 GGCGTACACGTGTTAGCT
Shewanella pealeana ATCC 700345 Spea_1951 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella halifaxensis HAW-EB4 Shal_2348 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella piezotolerans WP3 swp_2802 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella sediminis HAW-EB3 Ssed_2468 -57 6.3 AGCTTACACGTGTTCGCT
Shewanella woodyi ATCC 51908 Swoo_2148 -56 6.3 AGCTTACACGTGTTCGCT
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