Propagation of LexA regulog to Idiomarina loihiensis L2TR
| Source regulog: | LexA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Idiomarina loihiensis L2TR |
| Orthologous TF(s) | IL0262 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -25
Score: 5 Sequence: CACTGTACAAATAAACAGGT
Locus tag: IL0262
|
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| IL0262 | -25 | 5 | CACTGTACAAATAAACAGGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88) | ||||
| Shewanella oneidensis MR-1 | SO_4603 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3780 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp W3-18-1 | Sputw3181_0135 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp ANA-3 | Shewana3_3989 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp MR-4 | Shewmr4_3789 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella sp MR-7 | Shewmr7_3862 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella baltica OS155 | Sbal_0156 | -45 | 5.9 | TACTGTATATACTAACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella denitrificans OS217 | Sden_3515 | -45 | 5.1 | TACTGTATATAATGACAGTC |
| -26 | 5.1 | CACTGTATAAAAAGACAGGA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0260 | -45 | 5 | CACTGTATATAATGACAGTC |
| -26 | 5.1 | CACTGTATAAAAAGACAGGA | ||
| Shewanella amazonensis SB2B | Sama_3481 | -45 | 5.6 | TACTGTATATACTGACAGTA |
| -26 | 5 | AACTGTATAGAAAAACAGGA | ||
| Shewanella loihica PV-4 | Shew_0127 | -45 | 4.9 | TACTGTATATACTGACAGGT |
| -26 | 4.8 | TACTGTATGGAAAGACAGGA | ||
| Shewanella pealeana ATCC 700345 | Spea_3997 | -45 | 5.2 | TACTGTATATACTAACAGGT |
| -26 | 4.9 | TACTGTATAGAAAGACAGGG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0260 | -45 | 4.9 | TACTGTATATACTGACAGGT |
| -26 | 4.9 | TACTGTATAGAAAGACAGGG | ||
| Shewanella piezotolerans WP3 | swp_4821 | -45 | 5.2 | TACTGTATATACTAACAGGT |
| -26 | 5 | TACTGTATAGAAAAACAGGT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0200 | -45 | 5.6 | TACTGTATATACTAACAGTT |
| -26 | 5 | TACTGTATAGAAAGACAGGA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0180 | -45 | 5.3 | TACTGTATATACTGACAGTT |
| -26 | 5 | TACTGTATAGAAAGACAGGA | ||
|
Position: -39
Score: 5.5 Sequence: TACTGTTTATAAAACCAGTG
Locus tag: IL0742
|
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| IL0742 | -39 | 5.5 | TACTGTTTATAAAACCAGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: Recombinase A | ||||
| Shewanella oneidensis MR-1 | SO_3430 | -127 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2747 | -129 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella sp W3-18-1 | Sputw3181_1265 | -129 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella sp ANA-3 | Shewana3_1126 | -128 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella sp MR-4 | Shewmr4_1125 | -128 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella sp MR-7 | Shewmr7_1196 | -128 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella baltica OS155 | Sbal_3117 | -127 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella denitrificans OS217 | Sden_1208 | -203 | 5.8 | TACTGTATGATTATACAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1062 | -113 | 5.5 | TACTGTATGACTATACAGTA |
| Shewanella amazonensis SB2B | Sama_1046 | -115 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella loihica PV-4 | Shew_1215 | -127 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella pealeana ATCC 700345 | Spea_1195 | -124 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1232 | -124 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella piezotolerans WP3 | swp_1366 | -123 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella sediminis HAW-EB3 | Ssed_1300 | -135 | 5.6 | TACTGTATGATTGTACAGTA |
| Shewanella woodyi ATCC 51908 | Swoo_3340 | -124 | 5.5 | TACTGTATGACTATACAGTA |
|
Position: -48
Score: 5.9 Sequence: TACTGTACAAATAAACAGTA
Locus tag: IL1548
|
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| IL1548 | -48 | 5.9 | TACTGTACAAATAAACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yebG | ||||
| Ortholog function: SOS regulon DNA damage-inducible protein | ||||
| Shewanella oneidensis MR-1 | SO_2604 | -31 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella putrefaciens CN-32 | Sputcn32_2205 | -30 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella sp W3-18-1 | Sputw3181_1804 | -30 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella sp ANA-3 | Shewana3_1775 | -31 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella sp MR-4 | Shewmr4_1670 | -31 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella sp MR-7 | Shewmr7_1745 | -31 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella baltica OS155 | Sbal_2450 | -31 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella denitrificans OS217 | Sden_1719 | -31 | 6 | CACTGTATATAAAAACAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2231 | -31 | 5.9 | CACTGTATATAAAAACAGTG |
| Shewanella amazonensis SB2B | Sama_1582 | -31 | 5.8 | CACTGTATAAATAAACAGTG |
| Shewanella loihica PV-4 | Shew_1799 | -31 | 5.7 | AACTGTATATAAAAACAGTG |
| Shewanella pealeana ATCC 700345 | Spea_1932 | -31 | 5.9 | CACTGTATATAAAAACAGTG |
| Shewanella halifaxensis HAW-EB4 | Shal_2367 | -31 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella piezotolerans WP3 | swp_2821 | 11 | 6 | TACTGTATATAAAAACAGTG |
| Shewanella sediminis HAW-EB3 | Ssed_2486 | -31 | 5.9 | AACTGTATATAAAAACAGTA |
| Shewanella woodyi ATCC 51908 | Swoo_2130 | -31 | 5.9 | AACTGTATATAAAAACAGTA |