Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Idiomarina loihiensis L2TR

Reference regulog properties
Source regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Idiomarina loihiensis L2TR
Orthologous TF(s) IL0262
Regulated genes 4
Built upon 192 sites [see more]
Predicted regulatory interactions in Idiomarina loihiensis L2TR
Locus tag Position Score Sequence
Position: -25
Score: 5
Sequence: CACTGTACAAATAAACAGGT
Locus tag: IL0262
IL0262 -25 5 CACTGTACAAATAAACAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Shewanella oneidensis MR-1 SO_4603 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella putrefaciens CN-32 Sputcn32_3780 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp W3-18-1 Sputw3181_0135 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp ANA-3 Shewana3_3989 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-4 Shewmr4_3789 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-7 Shewmr7_3862 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella baltica OS155 Sbal_0156 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella denitrificans OS217 Sden_3515 -45 5.1 TACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella frigidimarina NCIMB 400 Sfri_0260 -45 5 CACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella amazonensis SB2B Sama_3481 -45 5.6 TACTGTATATACTGACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella loihica PV-4 Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
-26 4.8 TACTGTATGGAAAGACAGGA
Shewanella pealeana ATCC 700345 Spea_3997 -45 5.2 TACTGTATATACTAACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella halifaxensis HAW-EB4 Shal_0260 -45 4.9 TACTGTATATACTGACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella piezotolerans WP3 swp_4821 -45 5.2 TACTGTATATACTAACAGGT
-26 5 TACTGTATAGAAAAACAGGT
Shewanella sediminis HAW-EB3 Ssed_0200 -45 5.6 TACTGTATATACTAACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Shewanella woodyi ATCC 51908 Swoo_0180 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Position: -39
Score: 5.5
Sequence: TACTGTTTATAAAACCAGTG
Locus tag: IL0742
IL0742 -39 5.5 TACTGTTTATAAAACCAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Shewanella oneidensis MR-1 SO_3430 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella putrefaciens CN-32 Sputcn32_2747 -129 5.6 TACTGTATGATTGTACAGTA
Shewanella sp W3-18-1 Sputw3181_1265 -129 5.6 TACTGTATGATTGTACAGTA
Shewanella sp ANA-3 Shewana3_1126 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella sp MR-4 Shewmr4_1125 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella sp MR-7 Shewmr7_1196 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella baltica OS155 Sbal_3117 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella denitrificans OS217 Sden_1208 -203 5.8 TACTGTATGATTATACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1062 -113 5.5 TACTGTATGACTATACAGTA
Shewanella amazonensis SB2B Sama_1046 -115 5.6 TACTGTATGATTGTACAGTA
Shewanella loihica PV-4 Shew_1215 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella pealeana ATCC 700345 Spea_1195 -124 5.6 TACTGTATGATTGTACAGTA
Shewanella halifaxensis HAW-EB4 Shal_1232 -124 5.6 TACTGTATGATTGTACAGTA
Shewanella piezotolerans WP3 swp_1366 -123 5.6 TACTGTATGATTGTACAGTA
Shewanella sediminis HAW-EB3 Ssed_1300 -135 5.6 TACTGTATGATTGTACAGTA
Shewanella woodyi ATCC 51908 Swoo_3340 -124 5.5 TACTGTATGACTATACAGTA
Position: -48
Score: 5.9
Sequence: TACTGTACAAATAAACAGTA
Locus tag: IL1548
IL1548 -48 5.9 TACTGTACAAATAAACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yebG
Ortholog function: SOS regulon DNA damage-inducible protein
Shewanella oneidensis MR-1 SO_2604 -31 6 TACTGTATATAAAAACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2205 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp W3-18-1 Sputw3181_1804 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp ANA-3 Shewana3_1775 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-4 Shewmr4_1670 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-7 Shewmr7_1745 -31 6 TACTGTATATAAAAACAGTG
Shewanella baltica OS155 Sbal_2450 -31 6 TACTGTATATAAAAACAGTG
Shewanella denitrificans OS217 Sden_1719 -31 6 CACTGTATATAAAAACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_2231 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella amazonensis SB2B Sama_1582 -31 5.8 CACTGTATAAATAAACAGTG
Shewanella loihica PV-4 Shew_1799 -31 5.7 AACTGTATATAAAAACAGTG
Shewanella pealeana ATCC 700345 Spea_1932 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella halifaxensis HAW-EB4 Shal_2367 -31 6 TACTGTATATAAAAACAGTG
Shewanella piezotolerans WP3 swp_2821 11 6 TACTGTATATAAAAACAGTG
Shewanella sediminis HAW-EB3 Ssed_2486 -31 5.9 AACTGTATATAAAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2130 -31 5.9 AACTGTATATAAAAACAGTA
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