Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella sp MR-4

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp MR-4
Orthologous TF(s) Shewmr4_2605
Regulated genes 21
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Shewanella sp MR-4
Locus tag Position Score Sequence
Position: -179
Score: 4.5
Sequence: GTGTAAATAAAAAGTGGCAT
Locus tag: Shewmr4_0294
Shewmr4_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdo
Ortholog function: tryptophan 2,3-dioxygenase
Shewanella oneidensis MR-1 SO_4414 -175 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella putrefaciens CN-32 Sputcn32_0406 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp W3-18-1 Sputw3181_0260 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp ANA-3 Shewana3_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-4 Shewmr4_0294 -179 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella sp MR-7 Shewmr7_3725 -180 4.5 GTGTAAATAAAAAGTGGCAT
Shewanella baltica OS155 Sbal_0303 -159 4.6 GTGTAAATAAAAAATGGCAT
Shewanella denitrificans OS217 Sden_3451 -122 4.3 TCGGAAGTTAAACTTTACAT
Position: -106
Score: 5.1
Sequence: GTGTAAACATAGATTTGCAC
Locus tag: Shewmr4_0794
Shewmr4_0794 -106 5.1 GTGTAAACATAGATTTGCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: brnQ
Ortholog function: Branched-chain amino acid transport system carrier protein
Shewanella oneidensis MR-1 SO_0949 -121 5 GTGTAAACATAGGTTTGCAC
Shewanella putrefaciens CN-32 Sputcn32_0889 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp W3-18-1 Sputw3181_3284 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp ANA-3 Shewana3_3332 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-4 Shewmr4_0794 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-7 Shewmr7_3229 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella baltica OS155 Sbal_0842 -107 5.1 GTGTAAACAAAGATTTGCAC
Shewanella denitrificans OS217 Sden_0746 -229 4.1 GAGTATCGAAAAGTTTACAC
Shewanella frigidimarina NCIMB 400 Sfri_0662 -122 4.8 GTGTATTTTTAACTTTACAA
Shewanella amazonensis SB2B Sama_2740 -109 4.5 CTGTAATTCTGGCGTTACAC
Shewanella loihica PV-4 Shew_0769 -102 4.6 GTGTAATAAGAAGTTTACAC
Shewanella pealeana ATCC 700345 Spea_0804 -90 5.2 GTGTAAAGTAATAATTACAC
Shewanella halifaxensis HAW-EB4 Shal_0859 -94 5.1 GTGTAAACTAATCATTACAC
Shewanella piezotolerans WP3 swp_4229 -153 5 GTGTAAACCAAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_0892 -106 4.6 GTGTAATTGAAAGTTTACAC
Shewanella woodyi ATCC 51908 Swoo_0894 -67 5.1 GTGTAATCTAAAGTTTACAC
Position: -122
Score: 3.8
Sequence: GTGGCAACTTTCGCTGCCAC
Locus tag: Shewmr4_0948
Shewmr4_0948 -122 3.8 GTGGCAACTTTCGCTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepD
Ortholog function: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Shewanella putrefaciens CN-32 Sputcn32_0954 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella sp W3-18-1 Sputw3181_3222 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella baltica OS155 Sbal_0940 -123 4 CTGGAAACTTTGGCTGCCAG
Shewanella amazonensis SB2B Sama_2519 -123 4.4 CTGGAAACTTTGGCTTCCAC
Shewanella loihica PV-4 Shew_2852 -123 4.6 GTGGCAACTTAGTATGACAC
Shewanella pealeana ATCC 700345 Spea_3091 -141 4.5 GTGGAAACTTTGGCTGACAA
Shewanella halifaxensis HAW-EB4 Shal_3175 -160 4.6 GTGGAAACTTTGCCTGACAA
Shewanella piezotolerans WP3 swp_1180 -140 4 ATGGCAACTTCTGCTGACAC
Shewanella woodyi ATCC 51908 Swoo_3603 -180 3.8 TTGGCAACTTTCAATGACAG
Position: -116
Score: 3.8
Sequence: GTGGCAGCGAAAGTTGCCAC
Locus tag: Shewmr4_0949
Shewmr4_0949 -116 3.8 GTGGCAGCGAAAGTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1117
Ortholog function: peptidase M17, leucyl aminopeptidase
Shewanella putrefaciens CN-32 Sputcn32_0955 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella sp W3-18-1 Sputw3181_3221 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella baltica OS155 Sbal_0941 -116 4 CTGGCAGCCAAAGTTTCCAG
Shewanella amazonensis SB2B Sama_2518 -45 4.4 GTGGAAGCCAAAGTTTCCAG
Shewanella loihica PV-4 Shew_2851 -320 4.6 GTGTCATACTAAGTTGCCAC
Shewanella pealeana ATCC 700345 Spea_3090 -111 4.5 TTGTCAGCCAAAGTTTCCAC
Shewanella piezotolerans WP3 swp_1181 -106 4 GTGTCAGCAGAAGTTGCCAT
Shewanella woodyi ATCC 51908 Swoo_3602 -151 3.8 CTGTCATTGAAAGTTGCCAA
Position: -13
Score: 4
Sequence: ATGGAAGAAAAACATGACAA
Locus tag: Shewmr4_1390
Shewmr4_1390 -13 4 ATGGAAGAAAAACATGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aprE
Ortholog function: Alkaline serine protease
Shewanella sp ANA-3 Shewana3_1443 -357 3.9 TTTGAAATTATTCATTCCAA
Shewanella sp MR-4 Shewmr4_1390 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella sp MR-7 Shewmr7_1455 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella denitrificans OS217 Sden_1409 -105 4.1 GCGTATATAAATGGTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_2692 -333 4.7 CTGCAAAAATATCTTTACAC
Shewanella piezotolerans WP3 swp_3159 -171 4 ACGTAAAGAAATCTGTCCAC
Position: -154
Score: 5.2
Sequence: GTGGAAAGCTAGATTGCCAC
Locus tag: Shewmr4_1598
Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -155
Score: 3.9
Sequence: TTGGCAGGCTTTTTTGCCAG
Locus tag: Shewmr4_1921
Shewmr4_1921 -155 3.9 TTGGCAGGCTTTTTTGCCAG
Supported by regulated orthologs from reference regulons