Propagation of Crp regulog to Psychromonas sp. CNPT3
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Psychromonas sp. CNPT3 |
| Orthologous TF(s) | PCNPT3_13107 |
| Regulated genes | 49 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -57
Score: 3.8 Sequence: TGTCGTGAAAAACATAGCATTA
Locus tag: PCNPT3_01775
|
||||
| PCNPT3_01775 | -57 | 3.8 | TGTCGTGAAAAACATAGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glmS | ||||
| Ortholog function: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) | ||||
| Shewanella oneidensis MR-1 | SO4741 | -164 | 4.9 | AATTTTGATCTGTATCACGCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3951 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_4048 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp MR-4 | Shewmr4_3920 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella sp MR-7 | Shewmr7_4012 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4040 | -116 | 4.7 | ATTTTTGATATATATCACAGTC |
| Shewanella halifaxensis HAW-EB4 | Shal_4285 | -46 | 3.8 | TATTGCGACTCAATTAATACAT |
| Shewanella piezotolerans WP3 | swp_5148 | -117 | 4.3 | TGTTGTGCGCGAGTTCACATTG |
| Shewanella woodyi ATCC 51908 | Swoo_4892 | -91 | 3.8 | CTTTTTGATCTTTATCTAGTTT |
|
Position: -132
Score: 4.1 Sequence: AGATGTGAACTGCCACGCAAAT
Locus tag: PCNPT3_12468
|
||||
| PCNPT3_12468 | -132 | 4.1 | AGATGTGAACTGCCACGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) | ||||
| Shewanella oneidensis MR-1 | SO0862 | -145 | 4.7 | TTATGCGATATTGTTCTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3139 | -142 | 4.2 | TTATGCGATATTGTTCTAAATT |
| Shewanella sp W3-18-1 | Sputw3181_0804 | -142 | 4.2 | TTATGCGATATTGTTCTAAATT |
| Shewanella sp ANA-3 | Shewana3_3416 | -143 | 3.9 | TTATGCGATATTGTTCTAATTC |
| Shewanella sp MR-4 | Shewmr4_0718 | -143 | 3.9 | TTATGCGATATTGTTCTAATTC |
| Shewanella sp MR-7 | Shewmr7_3304 | -143 | 3.9 | TTATGCGATATTGTTCTAATTC |
| Shewanella baltica OS155 | Sbal_3502 | -142 | 4.1 | TTATGCGATATTGTTCTTAATT |
| Shewanella amazonensis SB2B | Sama_2949 | -144 | 4.2 | TTATGTGATATTGTTCTGGTTT |
|
Position: -145
Score: 4.8 Sequence: ATATGTAAACTACATCACAAAT
Position: -115
Score: 3.9 Sequence: ATCTTCTATCTACATCACAAAT
Locus tag: PCNPT3_06333
|
||||
| PCNPT3_06333 | -145 | 4.8 | ATATGTAAACTACATCACAAAT | |
| -115 | 3.9 | ATCTTCTATCTACATCACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2273 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1735 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2519 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2187 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2347 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1423 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1784 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2493 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2955 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2818 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1833 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -7
Score: 4.5 Sequence: TTTTATGATGAATGTCAAATTT
Locus tag: PCNPT3_06348
|
||||
| PCNPT3_06348 | -7 | 4.5 | TTTTATGATGAATGTCAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhB | ||||
| Ortholog function: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2270 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1738 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2516 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2184 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2344 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1426 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1787 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2490 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2950 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2815 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1836 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -104
Score: 3.6 Sequence: TGTTGTGTTGCGGTTTGAATAT
Locus tag: PCNPT3_02891
|
||||
| PCNPT3_02891 | -104 | 3.6 | TGTTGTGTTGCGGTTTGAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purH | ||||
| Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) | ||||
| Shewanella oneidensis MR-1 | SO0442 | -180 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3401 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0542 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp ANA-3 | Shewana3_0441 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-4 | Shewmr4_0445 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-7 | Shewmr7_3584 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella baltica OS155 | Sbal_0420 | -195 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0493 | -195 | 3.9 | TATTGTGAAATCACACAGAAAA |
| Shewanella amazonensis SB2B | Sama_0395 | -194 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella loihica PV-4 | Shew_3412 | -182 | 4 | TATTGTGAAATCGCACAGAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0432 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0488 | -182 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella piezotolerans WP3 | swp_4724 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0444 | -282 | 4 | GAGTGTGACGCTCTGCACAAAT |
| -191 | 4.2 | TATTGTGAAATCGTGCAGAAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0296 | -192 | 3.6 | TATTGTGAAATCACATATAAAT |
|
Position: -203
Score: 3.8 Sequence: CTTTGTGATCGAGCGCTAATTG
Locus tag: PCNPT3_03131
|
||||
| PCNPT3_03131 | -203 | 3.8 | CTTTGTGATCGAGCGCTAATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mviN | ||||
| Ortholog function: proposed peptidoglycan lipid II flippase MurJ | ||||
| Shewanella oneidensis MR-1 | SO3534 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1057 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp W3-18-1 | Sputw3181_3108 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp ANA-3 | Shewana3_3138 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-4 | Shewmr4_2959 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-7 | Shewmr7_3041 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella baltica OS155 | Sbal_1052 | -49 | 4.6 | TTTTTTGAGATGTATCACCTAA |
| Shewanella amazonensis SB2B | Sama_0922 | -138 | 3.9 | TATTGTTACTGGCAGCAAACAA |
|
Position: -173
Score: 4 Sequence: TTTTGATATTTACTTAACAATA
Locus tag: PCNPT3_03171
|
||||
| PCNPT3_03171 | -173 | 4 | TTTTGATATTTACTTAACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pilV | ||||
| Ortholog function: type IV fimbrial biogenesis protein PilV | ||||
| Shewanella oneidensis MR-1 | SO3528 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1063 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp W3-18-1 | Sputw3181_3102 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp ANA-3 | Shewana3_3132 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-4 | Shewmr4_2953 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-7 | Shewmr7_3035 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella baltica OS155 | Sbal_1058 | -49 | 4.6 | TTTTTTGAGATGTATCACCTAA |
| Shewanella amazonensis SB2B | Sama_0928 | -138 | 3.9 | TATTGTTACTGGCAGCAAACAA |
|
Position: -160
Score: 3.5 Sequence: GTTTTTGACAAAGATCTAATTT
Position: -7
Score: 3.8 Sequence: GAATTTTATGATAATCACAAAA
Locus tag: PCNPT3_13107
|
||||
| PCNPT3_13107 | -160 | 3.5 | GTTTTTGACAAAGATCTAATTT | |
| -7 | 3.8 | GAATTTTATGATAATCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: Cyclic AMP receptor protein Crp | ||||
| Shewanella oneidensis MR-1 | SO0624 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0652 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_3522 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_0617 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-4 | Shewmr4_0618 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-7 | Shewmr7_3412 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella baltica OS155 | Sbal_0578 | -174 | 3.7 | TTAGTTGACTTAAATCACTAAA |
| Shewanella denitrificans OS217 | Sden_3190 | -94 | 3.6 | AAACACGATCTTGGTCAAAGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3292 | -97 | 4 | AAATACGATCTCTATCAAAGTT |
| Shewanella amazonensis SB2B | Sama_3004 | -96 | 3.8 | AATTTCGATCTGCATCATGGTT |
| Shewanella loihica PV-4 | Shew_0585 | -238 | 4 | AGATGTGATATGGGCAACATTG |
| Shewanella pealeana ATCC 700345 | Spea_3509 | -225 | 3.6 | AGATGTGATATAAGCCTAATTG |
| Shewanella halifaxensis HAW-EB4 | Shal_3603 | -226 | 3.5 | AGATGTGATACAAGCCTAATTG |
| Shewanella piezotolerans WP3 | swp_0755 | -309 | 4.2 | TTTATTGATAAGGTTCAAAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_3873 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0662 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
|
Position: -87
Score: 4.6 Sequence: AAACGTGACCGATATCACTTTT
Locus tag: PCNPT3_03551
|
||||
| PCNPT3_03551 | -87 | 4.6 | AAACGTGACCGATATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-2 | ||||
| Ortholog function: Ribosome hibernation protein YfiA | ||||
| Shewanella oneidensis MR-1 | SO3422 | -78 | 4.7 | AAGTGTGATTTAACTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2740 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1272 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1133 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1132 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_1203 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella baltica OS155 | Sbal_1221 | -77 | 5.2 | AAATGTGATCTAGATCTCGTTT |
| Shewanella denitrificans OS217 | Sden_2746 | -77 | 4.8 | AAGTGTGACTTTGATCACGCTT |
| -38 | 4.1 | TAATCTGAAGTTAAGCACATAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2912 | -77 | 5 | AAGTGTGATGCAGATCACTATT |
| Shewanella amazonensis SB2B | Sama_0899 | -78 | 4.3 | AAACGTGATTTTACTCACGACT |
| Shewanella loihica PV-4 | Shew_1073 | -76 | 4.6 | AAAGTTGATCTAGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1060 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella halifaxensis HAW-EB4 | Shal_4284 | -83 | 4.6 | AAACATGACCTAGATCACACTA |
| -58 | 3.8 | TAATGTGATTGGACTATTGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1108 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella piezotolerans WP3 | swp_3757 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella sediminis HAW-EB3 | Ssed_1169 | -222 | 3.8 | TTTTGAGAGGCAAATAAAAAAA |
| -76 | 4.6 | AAACGTGATTTAGATCACGACT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1264 | -76 | 4.5 | AAACGTGATCAAGATCACGACT |
|
Position: -70
Score: 3.8 Sequence: AATTATAACGTAGTTTACACAA
Locus tag: PCNPT3_00561
|
||||
| PCNPT3_00561 | -70 | 3.8 | AATTATAACGTAGTTTACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: engB | ||||
| Ortholog function: GTP-binding protein EngB | ||||
| Shewanella oneidensis MR-1 | SO4667 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3907 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp W3-18-1 | Sputw3181_0044 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp ANA-3 | Shewana3_4110 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-4 | Shewmr4_3906 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-7 | Shewmr7_3998 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella baltica OS155 | Sbal_0052 | -95 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella denitrificans OS217 | Sden_3621 | -182 | 3.8 | TATTATGCTCGAAATAATATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3944 | -104 | 4.7 | TAATGTGATCAGGCTAATATTT |
| Shewanella amazonensis SB2B | Sama_0092 | -96 | 4.1 | ATATGTGATCGGGGCAATATTT |
| Shewanella loihica PV-4 | Shew_3715 | -95 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella pealeana ATCC 700345 | Spea_0101 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4221 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella piezotolerans WP3 | swp_5074a | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0095 | -95 | 4.7 | TTATGTGATCGAGGTAATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0058 | -110 | 4.8 | TATTGTGATCGAGGTAATATTT |
|
Position: -38
Score: 3.7 Sequence: CTACGTGAGTTAATACAAATTA
Locus tag: PCNPT3_08934
|
||||
| PCNPT3_08934 | -38 | 3.7 | CTACGTGAGTTAATACAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbA | ||||
| Ortholog function: nitrosative stress induced protein | ||||
| Shewanella oneidensis MR-1 | SO0324 | -97 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3663 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3804 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp ANA-3 | Shewana3_3845 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-4 | Shewmr4_3649 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-7 | Shewmr7_0295 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella baltica OS155 | Sbal_4067 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0404 | -142 | 4 | TTTTGCGATCCCAACCTCAAAA |
| Shewanella amazonensis SB2B | Sama_3326 | -94 | 3.6 | TTTTGTGCGCATCTTCATGCTT |
| Shewanella loihica PV-4 | Shew_0259 | -96 | 4.1 | TTTTGTGCGCATCTTCATAATT |
| Shewanella pealeana ATCC 700345 | Spea_0303 | -96 | 3.9 | TTTTGTGCACATCTTCAAAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3986 | -96 | 4 | TTTTGTGCACATCTTCAAACTT |
| Shewanella piezotolerans WP3 | swp_2171 | -96 | 4 | TTTTGTGCGCACCTTCAAACTT |
| Shewanella sediminis HAW-EB3 | Ssed_4199 | -187 | 3.9 | TTTTGTGCACATCTTCATACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0395 | -82 | 3.4 | TTCTGTGCGCACCTTCATAGAT |
|
Position: 20
Score: 4.2 Sequence: TAGTGCGATTTACTTAACATTG
Locus tag: PCNPT3_07835
|
||||
| PCNPT3_07835 | 20 | 4.2 | TAGTGCGATTTACTTAACATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: modB | ||||
| Ortholog function: molybdenum transport system permease protein ModB (TC 3.A.1.8.1) | ||||
| Shewanella oneidensis MR-1 | SO4447 | -220 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0394 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp W3-18-1 | Sputw3181_0248 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_0279 | -187 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0278 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella sp MR-7 | Shewmr7_3743 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella baltica OS155 | Sbal_0289 | -187 | 4 | TTAGGTGAGGACTGTCACAGAT |
| Shewanella denitrificans OS217 | Sden_0106 | -186 | 4.3 | TGAGGTGAGCTGTGTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0087 | -186 | 4.5 | TAGCGTGAGTCGAGTCACAAAT |
| Shewanella amazonensis SB2B | Sama_3530 | -180 | 4 | CTGAGTGAGCGGCGTCACAATT |
| Shewanella loihica PV-4 | Shew_0093 | -189 | 4.4 | CTTCGTGAGCGGTGTCACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4114 | -222 | 4.1 | TGCCGTGATAACTGTCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0128 | -222 | 4.3 | TGGCGTGATAACTGTCACAAAA |
| Shewanella piezotolerans WP3 | swp_5002 | -222 | 4.3 | TGAGGTGATTAGTGTCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4396 | -221 | 4.4 | GTATGTGAGGGGTGTCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4787 | -222 | 4.3 | GAATGTGAGTGTCGTCACAAAA |
|
Position: -87
Score: 3.9 Sequence: TTTAGTAATAAATATCAGATAA
Locus tag: PCNPT3_07855
|
||||
| PCNPT3_07855 | -87 | 3.9 | TTTAGTAATAAATATCAGATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaC | ||||
| Ortholog function: molybdenum cofactor biosynthesis protein MoaC | ||||
| Shewanella oneidensis MR-1 | SO4451 | -220 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0390 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp W3-18-1 | Sputw3181_0244 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_0275 | -187 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0274 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella sp MR-7 | Shewmr7_3747 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella baltica OS155 | Sbal_0285 | -187 | 4 | TTAGGTGAGGACTGTCACAGAT |
| Shewanella denitrificans OS217 | Sden_0102 | -186 | 4.3 | TGAGGTGAGCTGTGTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0083 | -186 | 4.5 | TAGCGTGAGTCGAGTCACAAAT |
| Shewanella amazonensis SB2B | Sama_3526 | -180 | 4 | CTGAGTGAGCGGCGTCACAATT |
| Shewanella loihica PV-4 | Shew_0089 | -189 | 4.4 | CTTCGTGAGCGGTGTCACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4118 | -222 | 4.1 | TGCCGTGATAACTGTCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0124 | -222 | 4.3 | TGGCGTGATAACTGTCACAAAA |
| Shewanella piezotolerans WP3 | swp_5007 | -222 | 4.3 | TGAGGTGATTAGTGTCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4400 | -221 | 4.4 | GTATGTGAGGGGTGTCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4791 | -222 | 4.3 | GAATGTGAGTGTCGTCACAAAA |
|
Position: -55
Score: 3.5 Sequence: ATTAATAACATAACTCACGTAA
Position: -36
Score: 4 Sequence: TAATATGATCCCATTCATAACA
Locus tag: PCNPT3_04309
|
||||
| PCNPT3_04309 | -55 | 3.5 | ATTAATAACATAACTCACGTAA | |
| -36 | 4 | TAATATGATCCCATTCATAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2757 | ||||
| Ortholog function: Histidine permease YuiF | ||||
| Shewanella oneidensis MR-1 | SO2757 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1598 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_2424 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp ANA-3 | Shewana3_2542 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-4 | Shewmr4_2377 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-7 | Shewmr7_2449 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella baltica OS155 | Sbal_1737 | -227 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella denitrificans OS217 | Sden_2092 | -208 | 4.3 | ATATGCGAGAGGGATCACAATC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1454 | -191 | 3.5 | TTAAATAATAAGTTTCAAATAT |
| Shewanella amazonensis SB2B | Sama_2095 | -210 | 3.9 | AATTTGGAGGAATATCACACAA |
| Shewanella loihica PV-4 | Shew_1515 | -230 | 4 | ATTTGGGATCATTGTCACTTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1682 | -225 | 3.9 | ATTTGATATCAATATCACTTTT |
| Shewanella piezotolerans WP3 | swp_1820 | -77 | 4.1 | ATTTGAGAGCAATATCACTTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1847 | -226 | 4.5 | ATTTGGGATCAATATCACCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_2742 | -155 | 4 | TTTAGTGCTGTTATTTACACTT |
|
Position: -203
Score: 3.8 Sequence: ATGTTTTATAAGAATCATATTA
Locus tag: PCNPT3_13183
|
||||
| PCNPT3_13183 | -203 | 3.8 | ATGTTTTATAAGAATCATATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhgI | ||||
| Ortholog function: NfuA Fe-S protein maturation | ||||
| Shewanella oneidensis MR-1 | SO4619 | -129 | 3.9 | AATCGTGATCACTATGGCAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3794 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0119 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp ANA-3 | Shewana3_4003 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-4 | Shewmr4_3804 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-7 | Shewmr7_3880 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella baltica OS155 | Sbal_0142 | -129 | 4 | AATCGTGATCGCTATGGCAAAA |
| Shewanella piezotolerans WP3 | swp_4841 | -131 | 3.8 | AAATGTGATCAGAACTGCGTTA |
|
Position: -251
Score: 3.7 Sequence: ATGAGTAACATTCATCAAAAAT
Position: -217
Score: 3.6 Sequence: CGATGCGCTTTATAGCACATTT
Position: -126
Score: 3.9 Sequence: CAATGTAATCTATAACATAAAT
Locus tag: PCNPT3_11923
|
||||
| PCNPT3_11923 | -251 | 3.7 | ATGAGTAACATTCATCAAAAAT | |
| -217 | 3.6 | CGATGCGCTTTATAGCACATTT | ||
| -126 | 3.9 | CAATGTAATCTATAACATAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: map | ||||
| Ortholog function: methionine aminopeptidase (EC 3.4.11.18) | ||||
| Shewanella pealeana ATCC 700345 | Spea_2886 | -104 | 4.2 | TAATTTGAAAAAAAGCACAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2982 | -92 | 3.7 | TAATATGAAAAAAAGCACAAAC |
| Shewanella piezotolerans WP3 | swp_3524 | -93 | 4.2 | TATTTTGAAAAAAAGCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_3162 | -91 | 3.9 | TATTGAGAGAGCAAACACAAAT |