Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Psychromonas sp. CNPT3

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Psychromonas sp. CNPT3
Orthologous TF(s) PCNPT3_13107
Regulated genes 49
Built upon 2713 sites [see more]
Predicted regulatory interactions in Psychromonas sp. CNPT3
Locus tag Position Score Sequence
Position: -57
Score: 3.8
Sequence: TGTCGTGAAAAACATAGCATTA
Locus tag: PCNPT3_01775
PCNPT3_01775 -57 3.8 TGTCGTGAAAAACATAGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glmS
Ortholog function: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Shewanella oneidensis MR-1 SO4741 -164 4.9 AATTTTGATCTGTATCACGCAA
Shewanella putrefaciens CN-32 Sputcn32_3951 -116 4.7 TAATTTGATCGGTATCACACTC
Shewanella sp W3-18-1 Sputw3181_4048 -116 4.7 TAATTTGATCGGTATCACACTC
Shewanella sp MR-4 Shewmr4_3920 -116 4.3 AAACTTGATCTAAGTCACGCTA
Shewanella sp MR-7 Shewmr7_4012 -116 4.3 AAACTTGATCTAAGTCACGCTA
Shewanella frigidimarina NCIMB 400 Sfri_4040 -116 4.7 ATTTTTGATATATATCACAGTC
Shewanella halifaxensis HAW-EB4 Shal_4285 -46 3.8 TATTGCGACTCAATTAATACAT
Shewanella piezotolerans WP3 swp_5148 -117 4.3 TGTTGTGCGCGAGTTCACATTG
Shewanella woodyi ATCC 51908 Swoo_4892 -91 3.8 CTTTTTGATCTTTATCTAGTTT
Position: -132
Score: 4.1
Sequence: AGATGTGAACTGCCACGCAAAT
Locus tag: PCNPT3_12468
PCNPT3_12468 -132 4.1 AGATGTGAACTGCCACGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Shewanella oneidensis MR-1 SO0862 -145 4.7 TTATGCGATATTGTTCTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3139 -142 4.2 TTATGCGATATTGTTCTAAATT
Shewanella sp W3-18-1 Sputw3181_0804 -142 4.2 TTATGCGATATTGTTCTAAATT
Shewanella sp ANA-3 Shewana3_3416 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella sp MR-4 Shewmr4_0718 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella sp MR-7 Shewmr7_3304 -143 3.9 TTATGCGATATTGTTCTAATTC
Shewanella baltica OS155 Sbal_3502 -142 4.1 TTATGCGATATTGTTCTTAATT
Shewanella amazonensis SB2B Sama_2949 -144 4.2 TTATGTGATATTGTTCTGGTTT
Position: -145
Score: 4.8
Sequence: ATATGTAAACTACATCACAAAT
Position: -115
Score: 3.9
Sequence: ATCTTCTATCTACATCACAAAT
Locus tag: PCNPT3_06333
PCNPT3_06333 -145 4.8 ATATGTAAACTACATCACAAAT
-115 3.9 ATCTTCTATCTACATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32 Sputcn32_2273 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1735 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2519 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2187 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1784 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1833 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -7
Score: 4.5
Sequence: TTTTATGATGAATGTCAAATTT
Locus tag: PCNPT3_06348
PCNPT3_06348 -7 4.5 TTTTATGATGAATGTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhB
Ortholog function: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Shewanella putrefaciens CN-32 Sputcn32_2270 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1738 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2516 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2184 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2344 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1426 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1787 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2490 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2950 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2815 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1836 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -104
Score: 3.6
Sequence: TGTTGTGTTGCGGTTTGAATAT
Locus tag: PCNPT3_02891
PCNPT3_02891 -104 3.6 TGTTGTGTTGCGGTTTGAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1 SO0442 -180 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32 Sputcn32_3401 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1 Sputw3181_0542 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3 Shewana3_0441 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4 Shewmr4_0445 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7 Shewmr7_3584 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155 Sbal_0420 -195 4 TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0493 -195 3.9 TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4 Shew_3412 -182 4 TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345 Spea_0432 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4 Shal_0488 -182 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3 swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3 Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908 Swoo_0296 -192 3.6 TATTGTGAAATCACATATAAAT
Position: -203
Score: 3.8
Sequence: CTTTGTGATCGAGCGCTAATTG
Locus tag: PCNPT3_03131
PCNPT3_03131 -203 3.8 CTTTGTGATCGAGCGCTAATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mviN
Ortholog function: proposed peptidoglycan lipid II flippase MurJ
Shewanella oneidensis MR-1 SO3534 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella putrefaciens CN-32 Sputcn32_1057 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp W3-18-1 Sputw3181_3108 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp ANA-3 Shewana3_3138 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-4 Shewmr4_2959 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-7 Shewmr7_3041 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella baltica OS155 Sbal_1052 -49 4.6 TTTTTTGAGATGTATCACCTAA
Shewanella amazonensis SB2B Sama_0922 -138 3.9 TATTGTTACTGGCAGCAAACAA
Position: -173
Score: 4
Sequence: TTTTGATATTTACTTAACAATA
Locus tag: PCNPT3_03171
PCNPT3_03171 -173 4 TTTTGATATTTACTTAACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pilV
Ortholog function: type IV fimbrial biogenesis protein PilV
Shewanella oneidensis MR-1 SO3528 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella putrefaciens CN-32 Sputcn32_1063 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp W3-18-1 Sputw3181_3102 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp ANA-3 Shewana3_3132 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-4 Shewmr4_2953 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella sp MR-7 Shewmr7_3035 -49 4.5 TTTTTTGAGATGAATCACCTAA
Shewanella baltica OS155 Sbal_1058 -49 4.6 TTTTTTGAGATGTATCACCTAA
Shewanella amazonensis SB2B Sama_0928 -138 3.9 TATTGTTACTGGCAGCAAACAA
Position: -160
Score: 3.5
Sequence: GTTTTTGACAAAGATCTAATTT
Position: -7
Score: 3.8
Sequence: GAATTTTATGATAATCACAAAA
Locus tag: PCNPT3_13107
PCNPT3_13107 -160 3.5 GTTTTTGACAAAGATCTAATTT
-7 3.8 GAATTTTATGATAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Cyclic AMP receptor protein Crp
Shewanella oneidensis MR-1 SO0624 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella putrefaciens CN-32 Sputcn32_0652 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp W3-18-1 Sputw3181_3522 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp ANA-3 Shewana3_0617 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-4 Shewmr4_0618 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella sp MR-7 Shewmr7_3412 -174 3.5 TTAGTTGACTAATATCACTAAA
Shewanella baltica OS155 Sbal_0578 -174 3.7 TTAGTTGACTTAAATCACTAAA
Shewanella denitrificans OS217 Sden_3190 -94 3.6 AAACACGATCTTGGTCAAAGTT
Shewanella frigidimarina NCIMB 400 Sfri_3292 -97 4 AAATACGATCTCTATCAAAGTT
Shewanella amazonensis SB2B Sama_3004 -96 3.8 AATTTCGATCTGCATCATGGTT
Shewanella loihica PV-4 Shew_0585 -238 4 AGATGTGATATGGGCAACATTG
Shewanella pealeana ATCC 700345 Spea_3509 -225 3.6 AGATGTGATATAAGCCTAATTG
Shewanella halifaxensis HAW-EB4 Shal_3603 -226 3.5 AGATGTGATACAAGCCTAATTG
Shewanella piezotolerans WP3 swp_0755 -309 4.2 TTTATTGATAAGGTTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_3873 -173 3.8 TTAGTTGACTTATATCACTAAT
Shewanella woodyi ATCC 51908 Swoo_0662 -173 3.8 TTAGTTGACTTATATCACTAAT
Position: -87
Score: 4.6
Sequence: AAACGTGACCGATATCACTTTT
Locus tag: PCNPT3_03551
PCNPT3_03551 -87 4.6 AAACGTGACCGATATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-2
Ortholog function: Ribosome hibernation protein YfiA
Shewanella oneidensis MR-1 SO3422 -78 4.7 AAGTGTGATTTAACTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_2740 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp W3-18-1 Sputw3181_1272 -77 5.1 TTTTGTGATTTAGATCTCGTTT
Shewanella sp ANA-3 Shewana3_1133 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-4 Shewmr4_1132 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella sp MR-7 Shewmr7_1203 -78 5.1 AAATGTGATTTAGATCTCGTTT
Shewanella baltica OS155 Sbal_1221 -77 5.2 AAATGTGATCTAGATCTCGTTT
Shewanella denitrificans OS217 Sden_2746 -77 4.8 AAGTGTGACTTTGATCACGCTT
-38 4.1 TAATCTGAAGTTAAGCACATAA
Shewanella frigidimarina NCIMB 400 Sfri_2912 -77 5 AAGTGTGATGCAGATCACTATT
Shewanella amazonensis SB2B Sama_0899 -78 4.3 AAACGTGATTTTACTCACGACT
Shewanella loihica PV-4 Shew_1073 -76 4.6 AAAGTTGATCTAGATCACGTTT
Shewanella pealeana ATCC 700345 Spea_1060 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella halifaxensis HAW-EB4 Shal_4284 -83 4.6 AAACATGACCTAGATCACACTA
-58 3.8 TAATGTGATTGGACTATTGTAA
Shewanella halifaxensis HAW-EB4 Shal_1108 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella piezotolerans WP3 swp_3757 -76 4.6 AAACGTGATTTAGATCACGACT
Shewanella sediminis HAW-EB3 Ssed_1169 -222 3.8 TTTTGAGAGGCAAATAAAAAAA
-76 4.6 AAACGTGATTTAGATCACGACT
Shewanella woodyi ATCC 51908 Swoo_1264 -76 4.5 AAACGTGATCAAGATCACGACT
Position: -70
Score: 3.8
Sequence: AATTATAACGTAGTTTACACAA
Locus tag: PCNPT3_00561
PCNPT3_00561 -70 3.8 AATTATAACGTAGTTTACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -38
Score: 3.7
Sequence: CTACGTGAGTTAATACAAATTA
Locus tag: PCNPT3_08934
PCNPT3_08934 -38 3.7 CTACGTGAGTTAATACAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbA
Ortholog function: nitrosative stress induced protein
Shewanella oneidensis MR-1 SO0324 -97 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella putrefaciens CN-32 Sputcn32_3663 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp W3-18-1 Sputw3181_3804 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella sp ANA-3 Shewana3_3845 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-4 Shewmr4_3649 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella sp MR-7 Shewmr7_0295 -97 4.1 TTTTGTGCGCATCTTCATAAAT
Shewanella baltica OS155 Sbal_4067 -96 4.1 TTTTGTGCGCACCTTCATAAAT
Shewanella frigidimarina NCIMB 400 Sfri_0404 -142 4 TTTTGCGATCCCAACCTCAAAA
Shewanella amazonensis SB2B Sama_3326 -94 3.6 TTTTGTGCGCATCTTCATGCTT
Shewanella loihica PV-4 Shew_0259 -96 4.1 TTTTGTGCGCATCTTCATAATT
Shewanella pealeana ATCC 700345 Spea_0303 -96 3.9 TTTTGTGCACATCTTCAAAGTT
Shewanella halifaxensis HAW-EB4 Shal_3986 -96 4 TTTTGTGCACATCTTCAAACTT
Shewanella piezotolerans WP3 swp_2171 -96 4 TTTTGTGCGCACCTTCAAACTT
Shewanella sediminis HAW-EB3 Ssed_4199 -187 3.9 TTTTGTGCACATCTTCATACTT
Shewanella woodyi ATCC 51908 Swoo_0395 -82 3.4 TTCTGTGCGCACCTTCATAGAT
Position: 20
Score: 4.2
Sequence: TAGTGCGATTTACTTAACATTG
Locus tag: PCNPT3_07835
PCNPT3_07835 20 4.2 TAGTGCGATTTACTTAACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: modB
Ortholog function: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Shewanella oneidensis MR-1 SO4447 -220 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32 Sputcn32_0394 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1 Sputw3181_0248 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3 Shewana3_0279 -187 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4 Shewmr4_0278 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7 Shewmr7_3743 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155 Sbal_0289 -187 4 TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217 Sden_0106 -186 4.3 TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0087 -186 4.5 TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B Sama_3530 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4 Shew_0093 -189 4.4 CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345 Spea_4114 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0128 -222 4.3 TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3 swp_5002 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4396 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4787 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -87
Score: 3.9
Sequence: TTTAGTAATAAATATCAGATAA
Locus tag: PCNPT3_07855
PCNPT3_07855 -87 3.9 TTTAGTAATAAATATCAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaC
Ortholog function: molybdenum cofactor biosynthesis protein MoaC
Shewanella oneidensis MR-1 SO4451 -220 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella putrefaciens CN-32 Sputcn32_0390 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp W3-18-1 Sputw3181_0244 -187 3.8 TTGGGTGAGGACTGTCACAGAT
Shewanella sp ANA-3 Shewana3_0275 -187 3.8 TTGGGTGAGCACTGTCACAGAT
Shewanella sp MR-4 Shewmr4_0274 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella sp MR-7 Shewmr7_3747 -187 3.9 TTGGGTGAGCGCTGTCACAGTT
Shewanella baltica OS155 Sbal_0285 -187 4 TTAGGTGAGGACTGTCACAGAT
Shewanella denitrificans OS217 Sden_0102 -186 4.3 TGAGGTGAGCTGTGTCACAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0083 -186 4.5 TAGCGTGAGTCGAGTCACAAAT
Shewanella amazonensis SB2B Sama_3526 -180 4 CTGAGTGAGCGGCGTCACAATT
Shewanella loihica PV-4 Shew_0089 -189 4.4 CTTCGTGAGCGGTGTCACATTA
Shewanella pealeana ATCC 700345 Spea_4118 -222 4.1 TGCCGTGATAACTGTCACAAAA
Shewanella halifaxensis HAW-EB4 Shal_0124 -222 4.3 TGGCGTGATAACTGTCACAAAA
Shewanella piezotolerans WP3 swp_5007 -222 4.3 TGAGGTGATTAGTGTCACAAAA
Shewanella sediminis HAW-EB3 Ssed_4400 -221 4.4 GTATGTGAGGGGTGTCACAAAA
Shewanella woodyi ATCC 51908 Swoo_4791 -222 4.3 GAATGTGAGTGTCGTCACAAAA
Position: -55
Score: 3.5
Sequence: ATTAATAACATAACTCACGTAA
Position: -36
Score: 4
Sequence: TAATATGATCCCATTCATAACA
Locus tag: PCNPT3_04309
PCNPT3_04309 -55 3.5 ATTAATAACATAACTCACGTAA
-36 4 TAATATGATCCCATTCATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2757
Ortholog function: Histidine permease YuiF
Shewanella oneidensis MR-1 SO2757 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella putrefaciens CN-32 Sputcn32_1598 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp W3-18-1 Sputw3181_2424 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp ANA-3 Shewana3_2542 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-4 Shewmr4_2377 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella sp MR-7 Shewmr7_2449 -225 4.2 ATTTAAGACCAATATCACATTT
Shewanella baltica OS155 Sbal_1737 -227 4.2 ATTTAAGACCAATATCACATTT
Shewanella denitrificans OS217 Sden_2092 -208 4.3 ATATGCGAGAGGGATCACAATC
Shewanella frigidimarina NCIMB 400 Sfri_1454 -191 3.5 TTAAATAATAAGTTTCAAATAT
Shewanella amazonensis SB2B Sama_2095 -210 3.9 AATTTGGAGGAATATCACACAA
Shewanella loihica PV-4 Shew_1515 -230 4 ATTTGGGATCATTGTCACTTTT
Shewanella halifaxensis HAW-EB4 Shal_1682 -225 3.9 ATTTGATATCAATATCACTTTT
Shewanella piezotolerans WP3 swp_1820 -77 4.1 ATTTGAGAGCAATATCACTTTT
Shewanella sediminis HAW-EB3 Ssed_1847 -226 4.5 ATTTGGGATCAATATCACCTTT
Shewanella woodyi ATCC 51908 Swoo_2742 -155 4 TTTAGTGCTGTTATTTACACTT
Position: -203
Score: 3.8
Sequence: ATGTTTTATAAGAATCATATTA
Locus tag: PCNPT3_13183
PCNPT3_13183 -203 3.8 ATGTTTTATAAGAATCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhgI
Ortholog function: NfuA Fe-S protein maturation
Shewanella oneidensis MR-1 SO4619 -129 3.9 AATCGTGATCACTATGGCAAAA
Shewanella putrefaciens CN-32 Sputcn32_3794 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp W3-18-1 Sputw3181_0119 -129 4.2 AATCGTGATCACTTTTGCAAAA
Shewanella sp ANA-3 Shewana3_4003 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-4 Shewmr4_3804 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella sp MR-7 Shewmr7_3880 -128 4.1 AAGCGTGATGGATTTTGCAAAA
Shewanella baltica OS155 Sbal_0142 -129 4 AATCGTGATCGCTATGGCAAAA
Shewanella piezotolerans WP3 swp_4841 -131 3.8 AAATGTGATCAGAACTGCGTTA
Position: -251
Score: 3.7
Sequence: ATGAGTAACATTCATCAAAAAT
Position: -217
Score: 3.6
Sequence: CGATGCGCTTTATAGCACATTT
Position: -126
Score: 3.9
Sequence: CAATGTAATCTATAACATAAAT
Locus tag: PCNPT3_11923
PCNPT3_11923 -251 3.7 ATGAGTAACATTCATCAAAAAT
-217 3.6 CGATGCGCTTTATAGCACATTT
-126 3.9 CAATGTAATCTATAACATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345 Spea_2886 -104 4.2 TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_2982 -92 3.7 TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3 swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3 Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
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