Propagation of PflR regulog to Psychromonas sp. CNPT3
| Source regulog: | PflR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Formate metabolism |
| Effector: | Formate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Psychromonas sp. CNPT3 |
| Orthologous TF(s) | PCNPT3_07740 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -250
Score: 5 Sequence: TATCAAATAAATTGAAT
Locus tag: PCNPT3_07735
|
||||
| PCNPT3_07735 | -250 | 5 | TATCAAATAAATTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2376 | -163 | 5.1 | TATCAGGGTTATTGATG |
| Shewanella sp W3-18-1 | Sputw3181_1633 | -163 | 5.1 | TATCAGGGTTATTGATG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2470 | -186 | 5.6 | AATCAATAATATTGATG |
| Shewanella amazonensis SB2B | Sama_1500 | -128 | 4.6 | TATAAGAAAAACTGATA |
| Shewanella loihica PV-4 | Shew_2388 | -210 | 5.4 | TATCAATTTTACTGATT |
| Shewanella pealeana ATCC 700345 | Spea_1674 | -157 | 5.2 | TATCAAGAAGTTTGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2590 | -158 | 5.1 | CATCAGGATATTTGATA |
| Shewanella piezotolerans WP3 | swp_1954 | -158 | 5.3 | TATCAAAATTAATGATA |
| Shewanella sediminis HAW-EB3 | Ssed_1710 | -161 | 5.2 | CATCAATGTACTTGATA |
| Shewanella woodyi ATCC 51908 | Swoo_2880 | -155 | 5.8 | TATCAATTATATTGATG |
|
Position: -54
Score: 5.6 Sequence: TTTCAATATAATTGATA
Locus tag: PCNPT3_07740
|
||||
| PCNPT3_07740 | -54 | 5.6 | TTTCAATATAATTGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pflR | ||||
| Ortholog function: Predicted transcriptional regulator for formate metabolism, LysR family | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2375 | -58 | 5.9 | TATCAATAAAATTGATA |
| Shewanella sp W3-18-1 | Sputw3181_1634 | -58 | 5.9 | TATCAATAAAATTGATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2469 | -53 | 5.8 | CATCAATTTTATTGATA |
| Shewanella amazonensis SB2B | Sama_1501 | -26 | 4.4 | CATCAATTCCTCTGATA |
| Shewanella loihica PV-4 | Shew_2387 | -59 | 5.8 | CATCAATTTTATTGATA |
| Shewanella pealeana ATCC 700345 | Spea_1675 | -63 | 5.8 | CATCAATTTTATTGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2589 | -62 | 5.8 | CATCAATTTTATTGATA |
| Shewanella piezotolerans WP3 | swp_1955 | -60 | 5.4 | CATCAAATAAATTGATA |
| Shewanella sediminis HAW-EB3 | Ssed_1712 | -61 | 5.9 | TATCAATTTTATTGATA |
| Shewanella woodyi ATCC 51908 | Swoo_2879 | -61 | 5.7 | CATCAATTTAATTGATA |