Propagation of MalR regulog to Saccharophagus degradans 2-40
| Source regulog: | MalR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Maltodextrin utilization |
| Effector: | Maltose |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Saccharophagus degradans 2-40 |
| Orthologous TF(s) | Sde_0591 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -279
Score: 5.9 Sequence: CATGAATACGTATGCAGT
Position: -169
Score: 6 Sequence: TATGAATACGTATGCAGT
Locus tag: Sde_0559
|
||||
| Sde_0559 | -279 | 5.9 | CATGAATACGTATGCAGT | |
| -169 | 6 | TATGAATACGTATGCAGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Mal)2 | ||||
| Ortholog function: Predicted maltose-specific TonB-dependent receptor | ||||
| Shewanella amazonensis SB2B | Sama_0286 | -140 | 6 | TGTGAATACGTATGCATA |
| Shewanella piezotolerans WP3 | swp_3412 | -143 | 6 | TATGAATACGTATGCAGC |
|
Position: -143
Score: 5.6 Sequence: TTTACATACGTATGTAAG
Position: -103
Score: 6 Sequence: CTTGAATACGTATGCAGT
Locus tag: Sde_0590
|
||||
| Sde_0590 | -143 | 5.6 | TTTACATACGTATGTAAG | |
| -103 | 6 | CTTGAATACGTATGCAGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: susB | ||||
| Ortholog function: Alpha-glucosidase (EC 3.2.1.20) | ||||
| Shewanella oneidensis MR-1 | SO_2450 | -90 | 5.4 | GTGGAATACGTATGCAAG |
| Shewanella sp ANA-3 | Shewana3_1931 | -90 | 6 | GGTGAATACGTATGCAAA |
| Shewanella sp MR-4 | Shewmr4_1876 | -90 | 6 | GGTGAATACGTATGCAAA |
| Shewanella sp MR-7 | Shewmr7_2102 | -90 | 6 | GGTGAATACGTATGCAAA |
| Shewanella baltica OS155 | Sbal_2329 | -90 | 5.9 | GGTGAATACGTATGCAGG |
| Shewanella denitrificans OS217 | Sden_2002 | -100 | 5.7 | CCTGAATACGTATGTAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1777 | -92 | 6.1 | ACTGAATACGTATGCAAA |
| Shewanella amazonensis SB2B | Sama_1108 | -89 | 6 | GCTGAATACGTATGCAGC |
| Shewanella loihica PV-4 | Shew_1876 | -164 | 5.9 | GGTGAATACGTATGCAGC |
| Shewanella piezotolerans WP3 | swp_2676 | -111 | 6.1 | TTTGAATACGTATGCAAG |
|
Position: -122
Score: 5.7 Sequence: CCTACATACGTATGCATC
Position: -94
Score: 5.8 Sequence: TTTGAATACGTATGTAAT
Locus tag: Sde_0600
|
||||
| Sde_0600 | -122 | 5.7 | CCTACATACGTATGCATC | |
| -94 | 5.8 | TTTGAATACGTATGTAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cga | ||||
| Ortholog function: Glucoamylase (EC 3.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO_2459 | -393 | 5.6 | gaTGaATACGTATGtAAg |
| Shewanella sp ANA-3 | Shewana3_1924 | -377 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella sp MR-4 | Shewmr4_1869 | -378 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella sp MR-7 | Shewmr7_2109 | -378 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella denitrificans OS217 | Sden_2004 | -294 | 5.6 | GATGAATACGTATGTAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1775 | -353 | 5.6 | CATGAATACGTATGTAGT |
| Shewanella amazonensis SB2B | Sama_1656 | -268 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella loihica PV-4 | Shew_1873 | -316 | 5.6 | GATGAATACGTATGTAAT |
| Shewanella piezotolerans WP3 | swp_2682 | -469 | 5.5 | caTGaATACGTATGtAtt |
| Shewanella woodyi ATCC 51908 | Swoo_2201 | -282 | 5.9 | CATGAATACGTATGCAAG |