Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of MalR regulog to Saccharophagus degradans 2-40

Reference regulog properties
Source regulog: MalR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Maltodextrin utilization
Effector: Maltose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Saccharophagus degradans 2-40
Orthologous TF(s) Sde_0591
Regulated genes 5
Built upon 67 sites [see more]
Predicted regulatory interactions in Saccharophagus degradans 2-40
Locus tag Position Score Sequence
Position: -279
Score: 5.9
Sequence: CATGAATACGTATGCAGT
Position: -169
Score: 6
Sequence: TATGAATACGTATGCAGT
Locus tag: Sde_0559
Sde_0559 -279 5.9 CATGAATACGTATGCAGT
-169 6 TATGAATACGTATGCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Mal)2
Ortholog function: Predicted maltose-specific TonB-dependent receptor
Shewanella amazonensis SB2B Sama_0286 -140 6 TGTGAATACGTATGCATA
Shewanella piezotolerans WP3 swp_3412 -143 6 TATGAATACGTATGCAGC
Position: -143
Score: 5.6
Sequence: TTTACATACGTATGTAAG
Position: -103
Score: 6
Sequence: CTTGAATACGTATGCAGT
Locus tag: Sde_0590
Sde_0590 -143 5.6 TTTACATACGTATGTAAG
-103 6 CTTGAATACGTATGCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: susB
Ortholog function: Alpha-glucosidase (EC 3.2.1.20)
Shewanella oneidensis MR-1 SO_2450 -90 5.4 GTGGAATACGTATGCAAG
Shewanella sp ANA-3 Shewana3_1931 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-4 Shewmr4_1876 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-7 Shewmr7_2102 -90 6 GGTGAATACGTATGCAAA
Shewanella baltica OS155 Sbal_2329 -90 5.9 GGTGAATACGTATGCAGG
Shewanella denitrificans OS217 Sden_2002 -100 5.7 CCTGAATACGTATGTAGT
Shewanella frigidimarina NCIMB 400 Sfri_1777 -92 6.1 ACTGAATACGTATGCAAA
Shewanella amazonensis SB2B Sama_1108 -89 6 GCTGAATACGTATGCAGC
Shewanella loihica PV-4 Shew_1876 -164 5.9 GGTGAATACGTATGCAGC
Shewanella piezotolerans WP3 swp_2676 -111 6.1 TTTGAATACGTATGCAAG
Position: -122
Score: 5.7
Sequence: CCTACATACGTATGCATC
Position: -94
Score: 5.8
Sequence: TTTGAATACGTATGTAAT
Locus tag: Sde_0600
Sde_0600 -122 5.7 CCTACATACGTATGCATC
-94 5.8 TTTGAATACGTATGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cga
Ortholog function: Glucoamylase (EC 3.2.1.3)
Shewanella oneidensis MR-1 SO_2459 -393 5.6 gaTGaATACGTATGtAAg
Shewanella sp ANA-3 Shewana3_1924 -377 5.6 GATGAATACGTATGTAAG
Shewanella sp MR-4 Shewmr4_1869 -378 5.6 GATGAATACGTATGTAAG
Shewanella sp MR-7 Shewmr7_2109 -378 5.6 GATGAATACGTATGTAAG
Shewanella denitrificans OS217 Sden_2004 -294 5.6 GATGAATACGTATGTAGT
Shewanella frigidimarina NCIMB 400 Sfri_1775 -353 5.6 CATGAATACGTATGTAGT
Shewanella amazonensis SB2B Sama_1656 -268 5.6 GATGAATACGTATGTAAG
Shewanella loihica PV-4 Shew_1873 -316 5.6 GATGAATACGTATGTAAT
Shewanella piezotolerans WP3 swp_2682 -469 5.5 caTGaATACGTATGtAtt
Shewanella woodyi ATCC 51908 Swoo_2201 -282 5.9 CATGAATACGTATGCAAG
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