Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AraR regulog to Saccharophagus degradans 2-40

Reference regulog properties
Source regulog: AraR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Saccharophagus degradans 2-40
Orthologous TF(s) No orthologous TFs found
Regulated genes 1
Built upon 30 sites [see more]
Predicted regulatory interactions in Saccharophagus degradans 2-40
Locus tag Position Score Sequence
Position: -116
Score: 5.5
Sequence: TGATATTATTGTATTACTA
Locus tag: Sde_3317
Sde_3317 -116 5.5 TGATATTATTGTATTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: abnA
Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Shewanella putrefaciens CN-32 Sputcn32_2047 -88 5.4 CAGTAGTATTGTATTACAT
Shewanella sp W3-18-1 Sputw3181_1965 -88 5.4 CAGTAGTATTGTATTACAT
Shewanella sp ANA-3 Shewana3_2086 -85 5.8 CAGTAGTATTGTATTACTT
Shewanella sp MR-4 Shewmr4_1999 -85 5.8 CAGTAGTATTGTATTACTT
Shewanella sp MR-7 Shewmr7_1976 -85 5.8 CAGTAGTATTGTATTACTT