Propagation of TyrR regulog to Alteromonadales bacterium TW-7
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Alteromonadales bacterium TW-7 |
| Orthologous TF(s) | ATW7_09938 |
| Regulated genes | 11 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -88
Score: 4.1 Sequence: TTGTCCAAAAATGTTTACAA
Locus tag: ATW7_09938
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| ATW7_09938 | -88 | 4.1 | TTGTCCAAAAATGTTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Shewanella oneidensis MR-1 | SO_1669 | -190 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1388 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_2713 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp ANA-3 | Shewana3_2779 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-4 | Shewmr4_2605 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-7 | Shewmr7_2672 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella baltica OS155 | Sbal_1486 | -196 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella denitrificans OS217 | Sden_2593 | -155 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1330 | -92 | 4.7 | CTGTAAACTTCACTTGCCAC |
| Shewanella amazonensis SB2B | Sama_2220 | -134 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella loihica PV-4 | Shew_1437 | -162 | 4.7 | GTGTAAACAACTCTTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_1450 | -158 | 4.6 | CTGTAAACAAGTCTTGCCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1533 | -159 | 4.1 | CTGTAAACAAGCCTTGCCAC |
| Shewanella piezotolerans WP3 | swp_1652 | -309 | 4.6 | cTGTAAAcaagtCTTgcCAC |
| Shewanella sediminis HAW-EB3 | Ssed_2928 | -151 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_1717 | -161 | 4.6 | CTGTAAACAAGACTTGCCAC |
|
Position: -37
Score: 3.8 Sequence: TAGTAAAGTAGACTTTACTT
Locus tag: ATW7_10228
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| ATW7_10228 | -37 | 3.8 | TAGTAAAGTAGACTTTACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3409 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3409 | -99 | 4.7 | AAGTAAAGCTTACTTGACAC |
| -55 | 4.3 | AAGTCAAGCTTAGTTGACAT | ||
| Shewanella loihica PV-4 | Shew_3626 | -90 | 4.4 | ATGTAAAGCATGCTTGACCT |
| -45 | 4.1 | ATGTAAAGGGTGTTTGACAT | ||
| Shewanella pealeana ATCC 700345 | Spea_0139 | -106 | 3.9 | AAGTAAAGCAAGCTTGACTT |
| -62 | 4.2 | AAGTCAAGCGTGCTTTACAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4179 | -105 | 3.9 | AAGTAAAGCATGCTTGACTT |
| -61 | 4.5 | AAGTCAAGCTTACTTTACAT | ||
| Shewanella piezotolerans WP3 | swp_0181 | -47 | 4.4 | AAGTAAAGCTCACTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_4363 | -111 | 3.9 | AAGTAAAGCAAGCTTGACTT |
|
Position: -204
Score: 4.4 Sequence: CTGTATTGTTAACTTGCCAC
Locus tag: ATW7_13253
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| ATW7_13253 | -204 | 4.4 | CTGTATTGTTAACTTGCCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bkdA1 | ||||
| Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) | ||||
| Shewanella oneidensis MR-1 | SO_2339 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1885 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp W3-18-1 | Sputw3181_2123 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp ANA-3 | Shewana3_2131 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-4 | Shewmr4_2028 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-7 | Shewmr7_1947 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella baltica OS155 | Sbal_4508 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella denitrificans OS217 | Sden_1786 | -153 | 4.5 | GCGTAAAGCAAATTATACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1935 | -156 | 4.5 | TCGTAAAGCAATATATACAT |
| Shewanella amazonensis SB2B | Sama_1709 | -150 | 4.3 | CTGTAAAGCAATTAATACAT |
| Shewanella loihica PV-4 | Shew_1925 | -175 | 4.7 | TTGTAAAGCTAGCGATACAT |
| Shewanella pealeana ATCC 700345 | Spea_2246 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2234 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella piezotolerans WP3 | swp_2606 | -162 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella sediminis HAW-EB3 | Ssed_2329 | -172 | 4.4 | TTGTAAAGCTAAAGATACGC |
| Shewanella woodyi ATCC 51908 | Swoo_2278 | -171 | 4 | ATGTAAAGCTAAACATACGG |
|
Position: -183
Score: 4.3 Sequence: GTGTATTTAATTGTATACAC
Position: -108
Score: 4.7 Sequence: GTGTAACTTTAAATTTACGA
Locus tag: ATW7_09356
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| ATW7_09356 | -183 | 4.3 | GTGTATTTAATTGTATACAC | |
| -108 | 4.7 | GTGTAACTTTAAATTTACGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO_1666 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp ANA-3 | Shewana3_2781 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp MR-4 | Shewmr4_2607 | -122 | 4.4 | TTGTAATATTTACTTTACGT |
| Shewanella sp MR-7 | Shewmr7_2674 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella baltica OS155 | Sbal_1484 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella denitrificans OS217 | Sden_2595 | -127 | 4.4 | TTGTATGCTTAAGTTTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -121 | 4.1 | TTGTATTTATTTGTTTACGA |
| Shewanella amazonensis SB2B | Sama_2222 | -123 | 4.3 | TTGTAATAAAAGCTTTACGA |
| Shewanella loihica PV-4 | Shew_1435 | -87 | 4.7 | ATGTAAATTTGAGGTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -239 | 4.3 | GTGTCAATTTCTATATACGC |
| -173 | 4.8 | GTGTAACATTAGCATTACAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -133 | 4.3 | GTGTAACAACTTCGTTACAC |
| Shewanella piezotolerans WP3 | swp_1650 | -188 | 4.6 | CTGTAAATTATGGCTTACAA |
| -123 | 4.5 | ATGTAAACTTATGGTTACGC | ||
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -188 | 3.7 | TCGTCAATAAATGGTGACGA |
| -122 | 4.2 | TTGTAAGCAAATTGTTACAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -186 | 3.8 | TTGGCAATAATTCAATACGA |
| -121 | 4.6 | GTGTAACTTTTTGGTTACAA | ||
|
Position: -139
Score: 4.6 Sequence: ATGGAAATATTTCTATACAG
Locus tag: ATW7_09361
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| ATW7_09361 | -139 | 4.6 | ATGGAAATATTTCTATACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mdeA | ||||
| Ortholog function: Methionine gamma-lyase (EC 4.4.1.11) | ||||
| Shewanella oneidensis MR-1 | SO_1812 | -197 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1507 | -210 | 4.1 | ATGTAACAAGTTAATTACAC |
| Shewanella sp W3-18-1 | Sputw3181_2594 | -210 | 4.1 | ATGTAACAAGTTAATTACAC |
| Shewanella sp ANA-3 | Shewana3_2643 | -208 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella sp MR-4 | Shewmr4_2477 | -208 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella sp MR-7 | Shewmr7_2545 | -208 | 3.9 | ATGTAACAACTTAGTTACAG |
| Shewanella baltica OS155 | Sbal_1622 | -199 | 4.1 | ATGTAACAAGTTAATTACAC |
| Shewanella denitrificans OS217 | Sden_2521 | -152 | 4.3 | ATGTAACATAGTTTTTACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1369 | -148 | 4.7 | TTGTAAAATTGTTTTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_2664 | -215 | 4 | ACGTAACAATCACTTTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2751 | -214 | 4.4 | TTGTAACATTCAGTTTACAA |
| Shewanella piezotolerans WP3 | swp_3243 | -242 | 4.1 | ACGTAACATATATTTTACAA |
|
Position: -165
Score: 3.8 Sequence: GTGGCAAAGAAACCTTACAG
Locus tag: ATW7_12588
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| ATW7_12588 | -165 | 3.8 | GTGGCAAAGAAACCTTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ivdA | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO_1677 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1397 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp W3-18-1 | Sputw3181_2704 | -167 | 4.3 | CTGTAAATCCTTACTGACAA |
| Shewanella sp ANA-3 | Shewana3_2771 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-4 | Shewmr4_2597 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella sp MR-7 | Shewmr7_2664 | -159 | 4.4 | CTGTAAATCCTGACTGACAA |
| Shewanella baltica OS155 | Sbal_1495 | -162 | 4.3 | CTGTAAATCCTTACTGACAT |
| Shewanella denitrificans OS217 | Sden_1943 | -159 | 4.4 | GTGTAAATCTTCAGTGACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1338 | -140 | 4.1 | CTGTAAATCTTCACTGACAA |
| Shewanella amazonensis SB2B | Sama_1375 | -195 | 3.8 | GTGTCAATCTCAGTTCCCGC |
| -173 | 4.6 | CTGTAAATCCAGAGTGACAA | ||
| Shewanella loihica PV-4 | Shew_1667 | -168 | 4.4 | CTGTAAATTCAGCCTGACAA |
| Shewanella pealeana ATCC 700345 | Spea_2783 | -231 | 4.5 | GTGTAAATTCTATGTGACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2878 | -231 | 4.4 | GTGTAAATCCTTTGTGACAT |
| Shewanella piezotolerans WP3 | swp_3387 | -75 | 3.8 | TTTTAAGTTGATGTTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1473 | -185 | 4.5 | CTGTAAATCCTGAGTGACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3202 | -173 | 4.7 | CTGTAAATCTTGAGTGACAT |