Propagation of TyrR regulog to Alteromonadales bacterium TW-7

Reference regulog properties
Source regulog:	TyrR - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	TyrR
Regulation mode:	activator
Biological process:	Amino acid utilization
Effector:	Tyrosine; Phenylalanine
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Alteromonadales bacterium TW-7
Orthologous TF(s)	ATW7_09938
Regulated genes	11

Built upon 312 sites [see more]

Predicted regulatory interactions in *Alteromonadales bacterium TW-7*
	Locus tag	Position	Score	Sequence
Position: -88 Score: 4.1 Sequence: TTGTCCAAAAATGTTTACAA Locus tag: ATW7_09938
	ATW7_09938	-88	4.1	TTGTCCAAAAATGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1	SO_1669	-190	4.7	CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32	Sputcn32_1388	-188	4.8	CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1	Sputw3181_2713	-188	4.8	CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3	Shewana3_2779	-205	4.7	CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4	Shewmr4_2605	-205	4.7	CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7	Shewmr7_2672	-205	4.7	CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155	Sbal_1486	-196	4.7	CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217	Sden_2593	-155	4.6	CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400	Sfri_1330	-92	4.7	CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B	Sama_2220	-134	4.6	CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4	Shew_1437	-162	4.7	GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345	Spea_1450	-158	4.6	CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4	Shal_1533	-159	4.1	CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3	swp_1652	-309	4.6	cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3	Ssed_2928	-151	4.6	CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908	Swoo_1717	-161	4.6	CTGTAAACAAGACTTGCCAC

Position: -37 Score: 3.8 Sequence: TAGTAAAGTAGACTTTACTT Locus tag: ATW7_10228
	ATW7_10228	-37	3.8	TAGTAAAGTAGACTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3409
Ortholog function: hypothetical protein
Shewanella frigidimarina NCIMB 400	Sfri_3409	-99	4.7	AAGTAAAGCTTACTTGACAC
		-55	4.3	AAGTCAAGCTTAGTTGACAT
Shewanella loihica PV-4	Shew_3626	-90	4.4	ATGTAAAGCATGCTTGACCT
		-45	4.1	ATGTAAAGGGTGTTTGACAT
Shewanella pealeana ATCC 700345	Spea_0139	-106	3.9	AAGTAAAGCAAGCTTGACTT
		-62	4.2	AAGTCAAGCGTGCTTTACAT
Shewanella halifaxensis HAW-EB4	Shal_4179	-105	3.9	AAGTAAAGCATGCTTGACTT
		-61	4.5	AAGTCAAGCTTACTTTACAT
Shewanella piezotolerans WP3	swp_0181	-47	4.4	AAGTAAAGCTCACTTTACAA
Shewanella sediminis HAW-EB3	Ssed_4363	-111	3.9	AAGTAAAGCAAGCTTGACTT

Position: -204 Score: 4.4 Sequence: CTGTATTGTTAACTTGCCAC Locus tag: ATW7_13253
	ATW7_13253	-204	4.4	CTGTATTGTTAACTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1	SO_2339	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32	Sputcn32_1885	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1	Sputw3181_2123	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella sp ANA-3	Shewana3_2131	-160	4.8	TTGTAAAGCATTATATACAT
Shewanella sp MR-4	Shewmr4_2028	-160	4.8	TTGTAAAGCATTATATACAT
Shewanella sp MR-7	Shewmr7_1947	-160	4.8	TTGTAAAGCATTATATACAT
Shewanella baltica OS155	Sbal_4508	-160	4.9	TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217	Sden_1786	-153	4.5	GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400	Sfri_1935	-156	4.5	TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B	Sama_1709	-150	4.3	CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4	Shew_1925	-175	4.7	TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345	Spea_2246	-161	4.8	ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4	Shal_2234	-161	4.8	ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3	swp_2606	-162	4.8	ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3	Ssed_2329	-172	4.4	TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908	Swoo_2278	-171	4	ATGTAAAGCTAAACATACGG

Position: -183 Score: 4.3 Sequence: GTGTATTTAATTGTATACAC Position: -108 Score: 4.7 Sequence: GTGTAACTTTAAATTTACGA Locus tag: ATW7_09356
	ATW7_09356	-183	4.3	GTGTATTTAATTGTATACAC
		-108	4.7	GTGTAACTTTAAATTTACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1	SO_1666	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32	Sputcn32_1386	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1	Sputw3181_2715	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3	Shewana3_2781	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella sp MR-4	Shewmr4_2607	-122	4.4	TTGTAATATTTACTTTACGT
Shewanella sp MR-7	Shewmr7_2674	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella baltica OS155	Sbal_1484	-122	4.4	TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217	Sden_2595	-127	4.4	TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400	Sfri_1328	-121	4.1	TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B	Sama_2222	-123	4.3	TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4	Shew_1435	-87	4.7	ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345	Spea_1448	-239	4.3	GTGTCAATTTCTATATACGC
		-173	4.8	GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4	Shal_1531	-133	4.3	GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3	swp_1650	-188	4.6	CTGTAAATTATGGCTTACAA
		-123	4.5	ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3	Ssed_2930	-188	3.7	TCGTCAATAAATGGTGACGA
		-122	4.2	TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908	Swoo_1715	-186	3.8	TTGGCAATAATTCAATACGA
		-121	4.6	GTGTAACTTTTTGGTTACAA

Position: -139 Score: 4.6 Sequence: ATGGAAATATTTCTATACAG Locus tag: ATW7_09361
	ATW7_09361	-139	4.6	ATGGAAATATTTCTATACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdeA
Ortholog function: Methionine gamma-lyase (EC 4.4.1.11)
Shewanella oneidensis MR-1	SO_1812	-197	3.9	ATGTAACAACTTAGTTACAG
Shewanella putrefaciens CN-32	Sputcn32_1507	-210	4.1	ATGTAACAAGTTAATTACAC
Shewanella sp W3-18-1	Sputw3181_2594	-210	4.1	ATGTAACAAGTTAATTACAC
Shewanella sp ANA-3	Shewana3_2643	-208	3.9	ATGTAACAACTTAGTTACAG
Shewanella sp MR-4	Shewmr4_2477	-208	3.9	ATGTAACAACTTAGTTACAG
Shewanella sp MR-7	Shewmr7_2545	-208	3.9	ATGTAACAACTTAGTTACAG
Shewanella baltica OS155	Sbal_1622	-199	4.1	ATGTAACAAGTTAATTACAC
Shewanella denitrificans OS217	Sden_2521	-152	4.3	ATGTAACATAGTTTTTACAT
Shewanella frigidimarina NCIMB 400	Sfri_1369	-148	4.7	TTGTAAAATTGTTTTTACAT
Shewanella pealeana ATCC 700345	Spea_2664	-215	4	ACGTAACAATCACTTTACAA
Shewanella halifaxensis HAW-EB4	Shal_2751	-214	4.4	TTGTAACATTCAGTTTACAA
Shewanella piezotolerans WP3	swp_3243	-242	4.1	ACGTAACATATATTTTACAA

Position: -165 Score: 3.8 Sequence: GTGGCAAAGAAACCTTACAG Locus tag: ATW7_12588
	ATW7_12588	-165	3.8	GTGGCAAAGAAACCTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1	SO_1677	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32	Sputcn32_1397	-167	4.3	CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1	Sputw3181_2704	-167	4.3	CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3	Shewana3_2771	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella sp MR-4	Shewmr4_2597	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella sp MR-7	Shewmr7_2664	-159	4.4	CTGTAAATCCTGACTGACAA
Shewanella baltica OS155	Sbal_1495	-162	4.3	CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217	Sden_1943	-159	4.4	GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400	Sfri_1338	-140	4.1	CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B	Sama_1375	-195	3.8	GTGTCAATCTCAGTTCCCGC
		-173	4.6	CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4	Shew_1667	-168	4.4	CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345	Spea_2783	-231	4.5	GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4	Shal_2878	-231	4.4	GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3	swp_3387	-75	3.8	TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3	Ssed_1473	-185	4.5	CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908	Swoo_3202	-173	4.7	CTGTAAATCTTGAGTGACAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TyrR regulog to Alteromonadales bacterium TW-7

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --