Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HypR regulog to Alteromonadales bacterium TW-7

Reference regulog properties
Source regulog: HypR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Alteromonadales bacterium TW-7
Orthologous TF(s) ATW7_13103
Regulated genes 3
Built upon 96 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Predicted regulatory interactions in Alteromonadales bacterium TW-7
Locus tag Position Score Sequence
Position: -342
Score: 5.3
Sequence: ATTGTATACAAT
Position: -45
Score: 4.7
Sequence: ACTGTATACAAT
Locus tag: ATW7_13098
ATW7_13098 -342 5.3 ATTGTATACAAT
-45 4.7 ACTGTATACAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hypD2
Ortholog function: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Shewanella pealeana ATCC 700345 Spea_1655 -52 5.1 ATTTTATACAAT