Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of FabR regulog to Alteromonadales bacterium TW-7

Reference regulog properties
Source regulog: FabR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid biosynthesis
Effector: Unsaturated acyl-ACP; Unsaturated acyl-CoA
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Alteromonadales bacterium TW-7
Orthologous TF(s) ATW7_16882
Regulated genes 6
Built upon 118 sites [see more]
Predicted regulatory interactions in Alteromonadales bacterium TW-7
Locus tag Position Score Sequence
Position: -155
Score: 6.1
Sequence: AGCGTACAGGTGTAAGCC
Locus tag: ATW7_02937
ATW7_02937 -155 6.1 AGCGTACAGGTGTAAGCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE3
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella loihica PV-4 Shew_3003 -156 5.7 AGCGTACACTTGTAACCT
Shewanella pealeana ATCC 700345 Spea_1234 -167 5.9 AGCGTACACGCGTAAGCT
Shewanella halifaxensis HAW-EB4 Shal_1266 -166 5.8 AGCGTACAGCCGTAAGCT
Shewanella piezotolerans WP3 swp_3422 -155 5.3 AGAGTACAGGCGTAAGCT
Shewanella woodyi ATCC 51908 Swoo_1504 -167 6.1 AGCGTACAGGTGTAAGCC
Position: -54
Score: 6.4
Sequence: AGCGTACAAGTGTACGCT
Locus tag: ATW7_12758
ATW7_12758 -54 6.4 AGCGTACAAGTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabA
Ortholog function: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Shewanella oneidensis MR-1 SO_1856 -53 6.3 AGCTTACACGTGTTCGCT
Shewanella putrefaciens CN-32 Sputcn32_1637 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp W3-18-1 Sputw3181_2388 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp ANA-3 Shewana3_1606 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella sp MR-4 Shewmr4_1545 -53 6.3 AGCTTACACGTGTTCGCT
Shewanella sp MR-7 Shewmr7_1612 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella baltica OS155 Sbal_2565 -54 6.3 AGCTTACACGTGTTCGCT
Shewanella denitrificans OS217 Sden_2465 -60 6.3 AGCGTACACCTGTTCGCT
Shewanella frigidimarina NCIMB 400 Sfri_2656 -60 6.3 AGCTTACACGTGTTCGCT
Shewanella amazonensis SB2B Sama_1605 -58 6 GGCGTACAGGTGTTCGCT
Shewanella loihica PV-4 Shew_1817 -55 6 GGCGTACACGTGTTAGCT
Shewanella pealeana ATCC 700345 Spea_1951 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella halifaxensis HAW-EB4 Shal_2348 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella piezotolerans WP3 swp_2802 -55 6.4 AGCGTACACGTGTTCGCT
Shewanella sediminis HAW-EB3 Ssed_2468 -57 6.3 AGCTTACACGTGTTCGCT
Shewanella woodyi ATCC 51908 Swoo_2148 -56 6.3 AGCTTACACGTGTTCGCT
Position: -109
Score: 6.1
Sequence: AGCGTACAGTTGTTCGCT
Locus tag: ATW7_11946
ATW7_11946 -109 6.1 AGCGTACAGTTGTTCGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: plsC
Ortholog function: 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)
Shewanella oneidensis MR-1 SO_0567 -80 4.9 AGCTTACAGATGTAAACA
Shewanella putrefaciens CN-32 Sputcn32_3308 -38 4.6 GGCTTACAGATGTAAACA
Shewanella sp W3-18-1 Sputw3181_0633 -38 4.6 GGCTTACAGATGTAAACA
Shewanella sp ANA-3 Shewana3_0568 -41 4.9 AGCTTACAGATGTAAACA
Shewanella sp MR-4 Shewmr4_0569 -41 4.9 AGCTTACAGATGTAAACA
Shewanella sp MR-7 Shewmr7_3461 -41 4.9 AGCTTACAGATGTAAACA
Shewanella baltica OS155 Sbal_0529 -80 4.9 AGCTTACAGATGTAAACA
Shewanella denitrificans OS217 Sden_0530 -80 4.9 AGCGTACATATGTAAACA
Shewanella frigidimarina NCIMB 400 Sfri_3514 -80 4.9 AGCGTACATATGTAAACA
Shewanella amazonensis SB2B Sama_3139 -80 4.8 AGCGCACACGTGTAAACA
Shewanella pealeana ATCC 700345 Spea_3713 -104 4.8 AGGCTACACGTGTAAACT
Shewanella halifaxensis HAW-EB4 Shal_3798 -104 4.8 AGGCTACACGTGTAAACT
Shewanella piezotolerans WP3 swp_0559 -116 4.6 AGGCTACATGTGTAAACT
Position: -31
Score: 6.2
Sequence: AGCTTACAGTTGTACGCT
Locus tag: ATW7_16877
ATW7_16877 -31 6.2 AGCTTACAGTTGTACGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: OLE1
Ortholog function: Fatty acid desaturase (EC 1.14.19.1)
Shewanella oneidensis MR-1 SO_0197 -42 6.3 AGCTTACAGCTGTACGCT
Shewanella putrefaciens CN-32 Sputcn32_3542 -43 6.2 AGCTTACAGATGTACGCT
Shewanella sp W3-18-1 Sputw3181_3679 -43 6.2 AGCTTACAGATGTACGCT
Shewanella sp ANA-3 Shewana3_0177 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella sp MR-4 Shewmr4_0176 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella sp MR-7 Shewmr7_0171 -21 6.2 AGCTTACAGTTGTACGCT
Shewanella baltica OS155 Sbal_4181 -43 6.2 AGCTTACAGATGTACGCT
Shewanella denitrificans OS217 Sden_0229 -41 6.2 AGCTTACAGATGTACGCT
Shewanella frigidimarina NCIMB 400 Sfri_0123 -53 6.2 AGCGTACAATTGTACGCT
Shewanella amazonensis SB2B Sama_0191 -29 6.3 AGCTTACAGCTGTACGCT
Shewanella loihica PV-4 Shew_0136 -43 6 GGCTTACAGCTGTACGCT
Shewanella pealeana ATCC 700345 Spea_0162 -9 6 GGCGTACAGATGTACGCT
Shewanella halifaxensis HAW-EB4 Shal_4156 -40 6.3 AGCGTACAGATGTACGCT
Shewanella piezotolerans WP3 swp_0204 -40 6.4 AGCGTACAGCTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_4340 -41 6.3 AGCGTACAGATGTACGCT
Shewanella woodyi ATCC 51908 Swoo_4712 -41 6.3 AGCGTACAGATGTACGCT
Position: -113
Score: 6.2
Sequence: AGCGTACAACTGTAAGCT
Locus tag: ATW7_16882
ATW7_16882 -113 6.2 AGCGTACAACTGTAAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fabR
Ortholog function: Unsaturated fatty acid biosythesis repressor FabR, TetR family
Shewanella pealeana ATCC 700345 Spea_0163 -55 6 AGCGTACATCTGTACGCC
Position: -48
Score: 5.8
Sequence: AGCGTACACTTGTACACT
Locus tag: ATW7_00075
ATW7_00075 -48 5.8 AGCGTACACTTGTACACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hylII
Ortholog function: COG1272: Predicted membrane protein hemolysin III homolog
Shewanella oneidensis MR-1 SO_2447 -114 6.5 AGCGTACACGTGTAAGCT
Shewanella putrefaciens CN-32 Sputcn32_1920 -85 6.3 AGCTTACAAGTGTACGCT
Shewanella sp W3-18-1 Sputw3181_2088 -85 6.3 AGCTTACAAGTGTACGCT
Shewanella sp ANA-3 Shewana3_1934 -84 6.4 AGCTTACACGTGTAAGCT
Shewanella sp MR-4 Shewmr4_1879 -84 6.4 AGCTTACACGTGTAAGCT
Shewanella sp MR-7 Shewmr7_2099 -84 6.4 AGCTTACACGTGTAAGCT
Shewanella baltica OS155 Sbal_2325 -85 6.3 AGCTTACAAGTGTACGCT
Shewanella denitrificans OS217 Sden_1768 -84 5.9 AGCTTACACGCGTACGCT
Shewanella frigidimarina NCIMB 400 Sfri_1873 -94 5.4 AGCTTACACGTGTTCACC
Shewanella amazonensis SB2B Sama_1862 -89 5.8 AGCGTACACATGTACTCT
Shewanella loihica PV-4 Shew_2098 -90 6.1 GGCGTACACATGTACGCT
Shewanella pealeana ATCC 700345 Spea_2385 -36 6.3 AGCTTACACGTGTTCGCT
Shewanella halifaxensis HAW-EB4 Shal_1898 -87 6.1 AGCGTACACGTGTGCGCT
Shewanella piezotolerans WP3 swp_2328 -130 6.3 AGCTAACACGTGTACGCT
Shewanella sediminis HAW-EB3 Ssed_2012 -88 6.6 AGCGTACACGTGTACGCT
Shewanella woodyi ATCC 51908 Swoo_2594 -88 6.5 AGCTTACACGTGTACGCT
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