Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Escherichia coli SE11

Type Regulator Effector Pathway Genes Sites
TF AbgR p-aminobenzoyl-glutamate p-aminobenzoyl-glutamate utilization 2 4
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AgaR N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate N-acetylgalactosamine utilization 3 4
TF AllR Allantoin Allantoin utilization 3 3
TF AlsR D-allose Allose utilization 2 2
TF AraC Arabinose Arabinose utilization 2 3
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 15 35
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 2 3
TF BetI Choline Glycine betaine synthesis 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 269 688
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF DeoR Deoxyribonucleoside utilization 3 4
TF DgoR Galactonate Galactonate utilization 1 1
TF EbgR Beta-galactosides Galactosides utilization 2 2
TF ExuR Galacturonate Galacturonate utilization 4 6
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 10 15
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 102 195
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 21 25
TF FucR L-fuculose-1-phosphate Fucose utilization 2 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 30 103
TF GalR/GalS Galactose Galactose utilization 5 6
TF GcvA Glycine Glycine metabolism 2 2
TF GlcC Glycolate Glycolate utilization 2 4
TF GlpR Glycerol 3-phosphate Glycerol utilization 3 5
TF GntR Gluconate Gluconate utilization 3 6
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 2 2
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 9 12
TF LacI Allolactose Lactose utilization 1 1
TF LeuO Guanosine 3',5'-bis(diphosphate) 3 5
TF LexA DNA damage SOS response 22 26
TF LldR L-lactate Lactate utilization 1 1
TF LsrR 4,5-dihydroxypentan-2,3-dione Quorum sensing; Biofilm formation 2 4
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MalI Maltose utilization 2 3
TF MarR Salicylate; Tetracycline; Chloramphenicol Antibiotic resistance 1 1
TF MetR Homocysteine Methionine biosynthesis 5 8
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 3 3
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 5 5
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 2 2
TF NadR NAD NAD biosynthesis 3 3
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 5 5
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 20 21
TF NhaR Potassium ion Osmotic stress response 1 2
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 2
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 8
TF NsrR Nitric oxide Nitrosative stress response 8 12
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 11 19
TF PaaX Phenylacetyl-CoA Phenylacetic acid degradation 2 4
TF PdhR Pyruvate Pyruvate metabolism 5 7
TF PhnF Phosphonate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 21 26
TF QorR Energy metabolism 2 2
TF RbsR Ribose Ribose utilization 1 1
TF RcnR Nickel ion, (Ni2+); Cobalt ion, (Co2+) Cobalt resistance; Nickel resistance 2 2
TF RhaS Rhamnose Rhamnose utilization 1 1
TF RutR Uracil Pyrimidine utilization 2 2
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 3 5
TF SoxR Paraquat Superoxide stress response 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 3 3
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 15
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 2 2
TF UxuR Glucuronate Glucuronate utilization 8 14
TF XapR Deoxyinosine; Xanthosine Xanthosine utilization 1 1
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 2 2
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 5
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