Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rhaM gene

Properties
Regulog: RhaR - Rhodobacterales
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Proteobacteria
Built upon 11 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Oceanicola granulosus HTCC2516
Position: -137
Score: 4.94763
Sequence: TCGAGCG-(3)-TCGCTCA
Position: -116
Score: 5.52735
Sequence: TCAATCA-(3)-TCGCTCA
Position: -74
Score: 6.65774
Sequence: ATGATTG-(3)-ATGATCG
Position: -64
Score: 6.65774
Sequence: ATGATCG-(3)-ATGATTG
Locus tag: OG2516_12156
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein
Locus tag: OG2516_12161
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: OG2516_12166
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: OG2516_12171
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: OG2516_12176
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: OG2516_12181
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: OG2516_12186
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -137 4.9 TCGAGCG-(3)-TCGCTCA OG2516_12156
-116 5.5 TCAATCA-(3)-TCGCTCA
-74 6.7 ATGATTG-(3)-ATGATCG
-64 6.7 ATGATCG-(3)-ATGATTG
Rhodobacterales bacterium HTCC2654
Position: -114
Score: 4.83012
Sequence: TCAACCA-(3)-CCGATCA
Position: -104
Score: 6.10345
Sequence: CCGATCA-(3)-ACGATCA
Position: -63
Score: 5.37772
Sequence: ATGAAAA-(3)-TTGATTG
Locus tag: RB2654_09464
Name: rhaR
Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein
Locus tag: RB2654_09459
Name: rhaF
Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: RB2654_09454
Name: rhaG
Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: RB2654_09449
Name: rhaH
Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: RB2654_09444
Name: rhaJ
Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: RB2654_09439
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: RB2654_09434
Name: rhaK
Funciton: putative rhamnulokinase
rhaR-rhaF-rhaG-rhaH-rhaJ-rhaM-rhaK -114 4.8 TCAACCA-(3)-CCGATCA RB2654_09464
-104 6.1 CCGATCA-(3)-ACGATCA
-63 5.4 ATGAAAA-(3)-TTGATTG