Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing pydC gene

Properties
Regulog: RutR - Rhizobiales
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Phylum: Proteobacteria/alpha
Built upon 44 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Agrobacterium tumefaciens str. C58 (Cereon)
Position: -145
Score: 5.19787
Sequence: TGTTTACCAGCCGGTCAATT
Locus tag: Atu2385
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Atu2386
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
Locus tag: Atu2387
Name: Atu2387
Funciton: NTP pyrophosphohydrolase, MutT family
Locus tag: Atu2388
Name: pytA
Funciton: Pyrimidine ABC transporter ATP-binding protein
Locus tag: Atu2389
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: Atu2390
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: Atu2391
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
pydC-pydB-Atu2387-pytA-pytB-pytC-pytD -145 5.2 TGTTTACCAGCCGGTCAATT Atu2385
Bradyrhizobium sp. BTAi1
Position: -136
Score: 5.05638
Sequence: ATCTGATCAAATGGTCAAAT
Locus tag: BBta_6033
Name: pytA
Funciton: Pyrimidine ABC transporter ATP-binding protein
Locus tag: BBta_6032
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: BBta_6031
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: BBta_6030
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
Locus tag: BBta_6029
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
Locus tag: BBta_6028
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
pytA-pytB-pytC-pytD-pydB-pydC -136 5.1 ATCTGATCAAATGGTCAAAT BBta_6033
Brucella melitensis 16M
Position: -148
Score: 5.09773
Sequence: TTTTGACCAACTAGTCAAGT
Locus tag: BMEI1643
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: BMEI1644
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
pydC-pydB -148 5.1 TTTTGACCAACTAGTCAAGT BMEI1643
Mesorhizobium loti MAFF303099
Position: -96
Score: 5.33527
Sequence: GTTTGTCCAATCGGTCAAAA
Locus tag: mll1632
Name: praX
Funciton: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Locus tag: mll1631
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: mll1629
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
praX-pydC-pydB -96 5.3 GTTTGTCCAATCGGTCAAAA mll1632
Mesorhizobium sp. BNC1
Position: -88
Score: 4.94419
Sequence: GATTGTCCAAACGGTCAAAA
Locus tag: Meso_2042
Name: praX
Funciton: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Locus tag: Meso_2043
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Meso_2044
Name: pytA
Funciton: Pyrimidine ABC transporter ATP-binding protein
Locus tag: Meso_2045
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: Meso_2046
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: Meso_2047
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
praX-pydC-pytA-pytB-pytC-pytD -88 4.9 GATTGTCCAAACGGTCAAAA Meso_2042
Rhizobium etli CFN 42
Position: -156
Score: 5.58419
Sequence: TGTTTACCAATCGGTCAAAT
Locus tag: RHE_CH03290
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: RHE_CH03291
Name: RL3717
Funciton: Hypothetical protein
Locus tag: RHE_CH03292
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
pydC-RL3717-pydB -156 5.6 TGTTTACCAATCGGTCAAAT RHE_CH03290
Rhizobium leguminosarum bv. viciae 3841
Position: -159
Score: 5.58419
Sequence: TGTTTACCAATCGGTCAAAT
Locus tag: RL3716
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: RL3717
Name: RL3717
Funciton: Hypothetical protein
Locus tag: RL3718
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
pydC-RL3717-pydB -159 5.6 TGTTTACCAATCGGTCAAAT RL3716
Rhizobium sp. NGR234
Position: -147
Score: 5.51835
Sequence: TGTTTACCAACCGGTCAAAT
Locus tag: NGR_c24830
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: NGR_c24840
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
pydC-pydB -147 5.5 TGTTTACCAACCGGTCAAAT NGR_c24830
Sinorhizobium meliloti 1021
Position: -145
Score: 5.51835
Sequence: TGTTTACCAACCGGTCAAAT
Locus tag: SMc01820
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: SMc01821
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
pydC-pydB -145 5.5 TGTTTACCAACCGGTCAAAT SMc01820
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