Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ruvB gene

Properties
Regulog: LexA - Rhodobacterales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria
Built upon 128 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Jannaschia sp. CCS1
Position: 2
Score: 5.19684
Sequence: GTTCGCGTTTCGTGC
Locus tag: Jann_0964
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Jann_0965
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: Jann_0966
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB 2 5.2 GTTCGCGTTTCGTGC Jann_0964
Loktanella vestfoldensis SKA53
Position: -49
Score: 5.30572
Sequence: GTTCGCCTTTTGTGC
Locus tag: SKA53_08611
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: SKA53_08606
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: SKA53_08601
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -49 5.3 GTTCGCCTTTTGTGC SKA53_08611
Oceanicaulis alexandrii HTCC2633
Position: -38
Score: 4.9189
Sequence: GGTCGCGTTTTGTTC
Locus tag: OA2633_07399
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: OA2633_07394
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: OA2633_07389
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -38 4.9 GGTCGCGTTTTGTTC OA2633_07399
Oceanicola batsensis HTCC2597
Position: -61
Score: 4.72409
Sequence: GTTCACTATTCGTGC
Locus tag: OB2597_15620
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: OB2597_15625
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: OB2597_15630
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -61 4.7 GTTCACTATTCGTGC OB2597_15620
Oceanicola granulosus HTCC2516
Position: -50
Score: 4.85623
Sequence: GTTCGCTGTTTGTGC
Locus tag: OG2516_07702
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: OG2516_07697
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: OG2516_07692
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -50 4.9 GTTCGCTGTTTGTGC OG2516_07702
Paracoccus denitrificans PD1222
Position: -44
Score: 5.14624
Sequence: GTTCGCCTTTCGTGC
Locus tag: Pden_0696
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Pden_0695
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: Pden_0694
Name: htpx
Funciton: Zn-dependent protease with chaperone function
Locus tag: Pden_0693
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-htpx-ruvB -44 5.1 GTTCGCCTTTCGTGC Pden_0696
Rhodobacter sphaeroides 2.4.1
Position: -48
Score: 4.97404
Sequence: GTTCCCGCTTCGTGC
Locus tag: RSP_0556
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: RSP_0555
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: RSP_0554
Name: htpx
Funciton: Zn-dependent protease with chaperone function
Locus tag: RSP_0553
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-htpx-ruvB -48 5 GTTCCCGCTTCGTGC RSP_0556
Rhodobacterales bacterium HTCC2654
Position: -62
Score: 5.19684
Sequence: GTTCGCGTTTCGTGC
Locus tag: RB2654_05712
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: RB2654_05707
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: RB2654_05702
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -62 5.2 GTTCGCGTTTCGTGC RB2654_05712
Roseobacter sp. MED193
Position: -64
Score: 5.30572
Sequence: GTTCGCCTTTTGTGC
Locus tag: MED193_09210
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: MED193_09205
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: MED193_09200
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: MED193_09195
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvA-ruvB -64 5.3 GTTCGCCTTTTGTGC MED193_09210
Roseovarius nubinhibens ISM
Position: -60
Score: 5.15214
Sequence: GTTCTTGTTTCGTGC
Locus tag: ISM_03450
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: ISM_03445
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: ISM_03440
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -60 5.2 GTTCTTGTTTCGTGC ISM_03450
Roseovarius sp. 217
Position: -51
Score: 5.18402
Sequence: GTTCCCGTTTCGTGC
Locus tag: ROS217_22507
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: ROS217_22502
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: ROS217_22497
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -51 5.2 GTTCCCGTTTCGTGC ROS217_22507
Silicibacter TM1040
Position: 4
Score: 5.35632
Sequence: GTTCGCGTTTTGTGC
Locus tag: TM1040_2373
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: TM1040_2372
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: TM1040_2371
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB 4 5.4 GTTCGCGTTTTGTGC TM1040_2373
Silicibacter pomeroyi DSS-3
Position: -60
Score: 5.13342
Sequence: GTTCCCCTTTCGTGC
Locus tag: SPO3117
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: SPO3116
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: SPO3115
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -60 5.1 GTTCCCCTTTCGTGC SPO3117
Sulfitobacter sp. EE-36
Position: -56
Score: 5.19684
Sequence: GTTCGCGTTTCGTGC
Locus tag: EE36_09705
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: EE36_09710
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: EE36_09715
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC-ruvA-ruvB -56 5.2 GTTCGCGTTTCGTGC EE36_09705
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