Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing PF04828 gene

Properties
Regulog: LiuR - Rhodobacterales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/alpha
Built upon 19 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Jannaschia sp. CCS1
Position: -93
Score: 5.17628
Sequence: AATTACGTAAACGTCATC
Locus tag: Jann_2969
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Jann_2970
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Jann_2971
Name: null
Funciton: hypothetical protein
Locus tag: Jann_2972
Name: null
Funciton: hypothetical protein
Locus tag: Jann_2973
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: Jann_2974
Name: null
Funciton: hypothetical protein
Locus tag: Jann_2975
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Jann_2976
Name: null
Funciton: hypothetical protein
Locus tag: Jann_2977
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-Jann_2971-Jann_2972-PF04828-Jann_2974-acdA-Jann_2976-acdB -93 5.2 AATTACGTAAACGTCATC Jann_2969
Loktanella vestfoldensis SKA53
Position: -84
Score: 6.02906
Sequence: GTTTACGTAAACGTCACC
Locus tag: SKA53_09319
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: SKA53_09324
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: SKA53_09329
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: SKA53_09334
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: SKA53_09339
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-PF04828-acdA-acdB -84 6 GTTTACGTAAACGTCACC SKA53_09319
Oceanicola batsensis HTCC2597
Position: -84
Score: 5.29954
Sequence: GCTTACGCTTGCGTCAAC
Locus tag: OB2597_06240
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: OB2597_06245
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: OB2597_06250
Name: null
Funciton: hypothetical protein
Locus tag: OB2597_06255
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: OB2597_06260
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: OB2597_06265
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-OB2597_06250-PF04828-acdA-acdB -84 5.3 GCTTACGCTTGCGTCAAC OB2597_06240
Paracoccus denitrificans PD1222
Position: 5
Score: 5.2718
Sequence: CCTTACGCGAACGTCAAC
Locus tag: Pden_2867
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Pden_2868
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: Pden_2869
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: Pden_2870
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: Pden_2871
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-PF04828-acdA-acdB 5 5.3 CCTTACGCGAACGTCAAC Pden_2867
Rhodobacter sphaeroides 2.4.1
Position: -87
Score: 6.27315
Sequence: GTTTACGTCAACGTCAAG
Locus tag: RSP_2200
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: RSP_2199
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: RSP_2198
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: RSP_2197
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: RSP_2196
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-PF04828-acdA-acdB -87 6.3 GTTTACGTCAACGTCAAG RSP_2200
Rhodobacterales bacterium HTCC2654
Position: -69
Score: 5.72564
Sequence: GTTGACGTAAACGTAATC
Locus tag: RB2654_20563
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: RB2654_20558
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: RB2654_20553
Name: null
Funciton: hypothetical protein
Locus tag: RB2654_20548
Name: null
Funciton: hypothetical protein
Locus tag: RB2654_20543
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: RB2654_20538
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: RB2654_20533
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-RB2654_20553-RB2654_20548-PF04828-acdA-acdB -69 5.7 GTTGACGTAAACGTAATC RB2654_20563
Roseobacter sp. MED193
Position: -105
Score: 6.39046
Sequence: GCTTACGTAAACGTCAAG
Locus tag: MED193_05934
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: MED193_05939
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: MED193_05944
Name: null
Funciton: hypothetical protein
Locus tag: MED193_05949
Name: acdA3
Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: MED193_05954
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: MED193_05959
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: MED193_05964
Name: null
Funciton: hypothetical protein
Locus tag: MED193_05969
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-MED193_05944-acdA3-PF04828-acdA-MED193_05964-acdB -105 6.4 GCTTACGTAAACGTCAAG MED193_05934
Roseovarius nubinhibens ISM
Position: -79
Score: 5.76226
Sequence: ACTTACGTAAACGTCAAT
Locus tag: ISM_02035
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: ISM_02040
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: ISM_02045
Name: null
Funciton: hypothetical protein
Locus tag: ISM_02050
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: ISM_02055
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: ISM_02060
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-ISM_02045-PF04828-acdA-acdB -79 5.8 ACTTACGTAAACGTCAAT ISM_02035
Roseovarius sp. 217
Position: -117
Score: 4.58294
Sequence: TCTTACGTCAACTTCAAA
Locus tag: ROS217_11336
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: ROS217_11341
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: ROS217_11346
Name: null
Funciton: hypothetical protein
Locus tag: ROS217_11351
Name: acdA3
Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: ROS217_11356
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: ROS217_11361
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: ROS217_11366
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-ROS217_11346-acdA3-PF04828-acdA-acdB -117 4.6 TCTTACGTCAACTTCAAA ROS217_11336
Silicibacter TM1040
Position: -98
Score: 5.53768
Sequence: AGTTACGTAAACGTCAAG
Locus tag: TM1040_1556
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: TM1040_1557
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: TM1040_1558
Name: null
Funciton: hypothetical protein
Locus tag: TM1040_1559
Name: acdA3
Funciton: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
Locus tag: TM1040_1560
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: TM1040_1561
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: TM1040_1562
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-TM1040_1558-acdA3-PF04828-acdA-acdB -98 5.5 AGTTACGTAAACGTCAAG TM1040_1556
Silicibacter pomeroyi DSS-3
Position: -87
Score: 6.27315
Sequence: GCTTACGTCAACGTCAAG
Locus tag: SPO2914
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: SPO2915
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: SPO2916
Name: null
Funciton: hypothetical protein
Locus tag: SPO2917
Name: PF04828
Funciton: Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18)
Locus tag: SPO2918
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: SPO2919
Name: null
Funciton: hypothetical protein
Locus tag: SPO2920
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
liuR-acdH-SPO2916-PF04828-acdA-SPO2919-acdB -87 6.3 GCTTACGTCAACGTCAAG SPO2914
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