Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing focA gene

Properties
Regulog: PflR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Formate metabolism
Effector: Formate
Phylum: Proteobacteria/gamma
Built upon 35 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -128
Score: 4.62459
Sequence: TATAAGAAAAACTGATA
Locus tag: Sama_1500
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -128 4.6 TATAAGAAAAACTGATA Sama_1500
Shewanella frigidimarina NCIMB 400
Position: -186
Score: 5.55923
Sequence: AATCAATAATATTGATG
Locus tag: Sfri_2470
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -186 5.6 AATCAATAATATTGATG Sfri_2470
Shewanella halifaxensis HAW-EB4
Position: -158
Score: 5.05734
Sequence: CATCAGGATATTTGATA
Locus tag: Shal_2590
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -158 5.1 CATCAGGATATTTGATA Shal_2590
Shewanella loihica PV-4
Position: -210
Score: 5.39832
Sequence: TATCAATTTTACTGATT
Locus tag: Shew_2388
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -210 5.4 TATCAATTTTACTGATT Shew_2388
Shewanella pealeana ATCC 700345
Position: -157
Score: 5.16584
Sequence: TATCAAGAAGTTTGATA
Locus tag: Spea_1674
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -157 5.2 TATCAAGAAGTTTGATA Spea_1674
Shewanella piezotolerans WP3
Position: -158
Score: 5.28187
Sequence: TATCAAAATTAATGATA
Locus tag: swp_1954
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -158 5.3 TATCAAAATTAATGATA swp_1954
Shewanella putrefaciens CN-32
Position: -163
Score: 5.07353
Sequence: TATCAGGGTTATTGATG
Locus tag: Sputcn32_2376
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -163 5.1 TATCAGGGTTATTGATG Sputcn32_2376
Shewanella sediminis HAW-EB3
Position: -161
Score: 5.23966
Sequence: CATCAATGTACTTGATA
Locus tag: Ssed_1710
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -161 5.2 CATCAATGTACTTGATA Ssed_1710
Shewanella sp W3-18-1
Position: -163
Score: 5.07353
Sequence: TATCAGGGTTATTGATG
Locus tag: Sputw3181_1633
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -163 5.1 TATCAGGGTTATTGATG Sputw3181_1633
Shewanella woodyi ATCC 51908
Position: -155
Score: 5.78539
Sequence: TATCAATTATATTGATG
Locus tag: Swoo_2880
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
focA -155 5.8 TATCAATTATATTGATG Swoo_2880
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