Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing liuD gene

Properties
Regulog: LiuR - Pseudomonadaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Built upon 32 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azotobacter vinelandii AvOP
Position: -38
Score: 6.33972
Sequence: GTTTACGTTTACGTAAAG
Position: -32
Score: 5.36161
Sequence: GTTTACGTAAAGGTAATA
Locus tag: Avin_49570
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Avin_49560
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Avin_49550
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Avin_49530
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Avin_49520
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Avin_49510
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR-liuA-liuB-liuC-liuD-liuE -38 6.3 GTTTACGTTTACGTAAAG Avin_49570
-32 5.4 GTTTACGTAAAGGTAATA
Pseudomonas aeruginosa PAO1
Position: -40
Score: 6.53232
Sequence: CTTTACGTTAACGTAAAG
Position: -34
Score: 5.46454
Sequence: GTTAACGTAAAGGTAAAC
Locus tag: PA2016
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: PA2015
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PA2014
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PA2013
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PA2012
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: PA2011
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR-liuA-liuB-liuC-liuD-liuE -40 6.5 CTTTACGTTAACGTAAAG PA2016
-34 5.5 GTTAACGTAAAGGTAAAC
Pseudomonas entomophila L48
Position: -223
Score: 5.92222
Sequence: ATTTACGTTTACGTAAAG
Position: -217
Score: 5.14911
Sequence: GTTTACGTAAAGGTTATG
Position: -173
Score: 6.18168
Sequence: GTTTACGTTAACGTCAAC
Locus tag: PSEEN3386
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PSEEN3387
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PSEEN3388
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PSEEN3389
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuA-liuB-liuC-liuD -223 5.9 ATTTACGTTTACGTAAAG PSEEN3386
-217 5.1 GTTTACGTAAAGGTTATG
-173 6.2 GTTTACGTTAACGTCAAC
Pseudomonas fluorescens Pf-5
Position: -131
Score: 6.0297
Sequence: GTTGACGTTTACGTAAAG
Position: -88
Score: 6.51201
Sequence: GTTTACGTTAACGTAAAG
Locus tag: PFL_3936
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PFL_3937
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PFL_3938
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PFL_3939
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuA-liuB-liuC-liuD -131 6 GTTGACGTTTACGTAAAG PFL_3936
-88 6.5 GTTTACGTTAACGTAAAG
Pseudomonas mendocina ymp
Position: -29
Score: 6.51201
Sequence: GTTTACGTTAACGTAAAG
Position: -23
Score: 5.46454
Sequence: GTTAACGTAAAGGTAAAC
Locus tag: Pmen_2034
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Pmen_2033
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Pmen_2032
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Pmen_2031
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Pmen_2030
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Pmen_2029
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR-liuA-liuB-liuC-liuD-liuE -29 6.5 GTTTACGTTAACGTAAAG Pmen_2034
-23 5.5 GTTAACGTAAAGGTAAAC
Pseudomonas putida KT2440
Position: -148
Score: 5.92222
Sequence: ATTTACGTTTACGTAAAG
Position: -97
Score: 6.51201
Sequence: GTTTACGTTAACGTAAAG
Locus tag: PP4064
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PP4065
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PP4066
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PP4067
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuA-liuB-liuC-liuD -148 5.9 ATTTACGTTTACGTAAAG PP4064
-97 6.5 GTTTACGTTAACGTAAAG
Pseudomonas stutzeri A1501
Position: -133
Score: 6.53232
Sequence: CTTTACGTTAACGTAAAG
Locus tag: PST_3213
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PST_3214
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PST_3215
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PST_3216
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: PST_3217
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuA-liuB-liuC-liuD-liuE -133 6.5 CTTTACGTTAACGTAAAG PST_3213
Pseudomonas syringae pv. tomato str. DC3000
Position: 109
Score: 6.51201
Sequence: gTTTACGTTAACGTAAAG
Locus tag: PSPTO2739
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PSPTO2738
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PSPTO2737
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PSPTO2736
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuA-liuB-liuC-liuD 109 6.5 gTTTACGTTAACGTAAAG PSPTO2739
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