Orthologous regulated operons containing ivdD gene
| Regulog: | LiuR - Vibrionales |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Photobacterium profundum SS9 | ||||
|
Position: -117
Score: 5.92222 Sequence: CTTTACGTTTACGTAAAT
Position: -88
Score: 5.67144 Sequence: GCTTACGTAAACGTCAAG
Locus tag: PBPRB1112
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: PBPRB1111
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: PBPRB1110
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: PBPRB1109
Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: PBPRB1108
Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: PBPRB1107
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: PBPRB1106
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
||||
| ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG | -117 | 5.9 | CTTTACGTTTACGTAAAT | PBPRB1112 |
| -88 | 5.7 | GCTTACGTAAACGTCAAG | ||
| Vibrio harveyi ATCC BAA-1116 | ||||
|
Position: -178
Score: 5.92222 Sequence: CTTTACGTTTACGTAAAT
Position: -149
Score: 5.67144 Sequence: GCTTACGTAAACGTCAAG
Locus tag: VIBHAR_05482
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VIBHAR_05483
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VIBHAR_05484
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VIBHAR_05485
Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VIBHAR_05486
Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VIBHAR_05487
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VIBHAR_05488
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
||||
| ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG | -178 | 5.9 | CTTTACGTTTACGTAAAT | VIBHAR_05482 |
| -149 | 5.7 | GCTTACGTAAACGTCAAG | ||
| Vibrio parahaemolyticus RIMD 2210633 | ||||
|
Position: -161
Score: 5.35481 Sequence: GTTAACGTTAAAGTAAAC
Position: -61
Score: 5.7845 Sequence: CTTGACGTTAACGTAAAT
Position: -32
Score: 5.07331 Sequence: TATGACGTAAACGTCAAC
Locus tag: VPA1123
Name: ivdA2 Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VPA1122
Name: ivdB2 Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VPA1121
Name: ivdC2 Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VPA1120
Name: ivdD2 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VPA1119
Name: ivdE2 Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VPA1118
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VPA1117
Name: ivdG2 Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
||||
| ivdA2-ivdB2-ivdC2-ivdD2-ivdE2-ivdF-ivdG2 | -161 | 5.4 | GTTAACGTTAAAGTAAAC | VPA1123 |
| -61 | 5.8 | CTTGACGTTAACGTAAAT | ||
| -32 | 5.1 | TATGACGTAAACGTCAAC | ||
| Vibrio shilonii AK1 | ||||
|
Position: -107
Score: 5.92222 Sequence: CTTTACGTTTACGTAAAT
Locus tag: VSAK1_15257
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VSAK1_15252
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VSAK1_15247
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VSAK1_15242
Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VSAK1_15237
Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VSAK1_15232
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VSAK1_15227
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VSAK1_15222
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
||||
| ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdF-ivdG | -107 | 5.9 | CTTTACGTTTACGTAAAT | VSAK1_15257 |
| Vibrio vulnificus CMCP6 | ||||
|
Position: -101
Score: 5.92222 Sequence: CTTTACGTTTACGTAAAT
Position: -72
Score: 5.67144 Sequence: GCTTACGTAAACGTCAAG
Locus tag: VV20494
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VV20493
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VV20492
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VV20491
Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VV20490
Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VV20489
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VV20488
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
||||
| ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG | -101 | 5.9 | CTTTACGTTTACGTAAAT | VV20494 |
| -72 | 5.7 | GCTTACGTAAACGTCAAG | ||