Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing etfD gene

Properties
Regulog: LiuR - Alteromonadales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Built upon 65 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Alteromonadales bacterium TW-7
Position: -191
Score: 4.71441
Sequence: CCTAACGTGTACGTCAAC
Position: -142
Score: 5.6789
Sequence: GTTGACGTAAACGTCAAC
Locus tag: ATW7_13183
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD -191 4.7 CCTAACGTGTACGTCAAC ATW7_13183
-142 5.7 GTTGACGTAAACGTCAAC
Alteromonas macleodii 'Deep ecotype'
Position: -176
Score: 6.17731
Sequence: GTTGACGTTAACGTAAAC
Position: -138
Score: 5.6789
Sequence: GTTGACGTAAACGTCAAC
Locus tag: MADE_00995
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD -176 6.2 GTTGACGTTAACGTAAAC MADE_00995
-138 5.7 GTTGACGTAAACGTCAAC
Colwellia psychrerythraea 34H
Position: -203
Score: 5.55839
Sequence: CTTTACGTCAACGTCAAC
Position: -197
Score: 4.75482
Sequence: GTCAACGTCAACGTAAAC
Locus tag: CPS_3686
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD -203 5.6 CTTTACGTCAACGTCAAC CPS_3686
-197 4.8 GTCAACGTCAACGTAAAC
Idiomarina baltica OS145
Position: -61
Score: 6.38125
Sequence: CTTTACGTTAACGTAAAC
Locus tag: OS145_12909
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: OS145_12904
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: OS145_12899
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: OS145_12894
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: OS145_12889
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: OS145_12884
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: OS145_12879
Name: aacS
Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Locus tag: OS145_12874
Name: IL0880
Funciton: Sensory box/GGDEF family protein
Locus tag: OS145_12869
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
liuR-liuA-liuB-liuC-liuD-liuE-aacS-IL0880-etfD -61 6.4 CTTTACGTTAACGTAAAC OS145_12909
Idiomarina loihiensis L2TR
Position: -62
Score: 6.38125
Sequence: CTTTACGTTAACGTAAAC
Locus tag: IL0873
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: IL0874
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: IL0875
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: IL0876
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: IL0877
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: IL0878
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: IL0879
Name: aacS
Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Locus tag: IL0880
Name: IL0880
Funciton: Sensory box/GGDEF family protein
Locus tag: IL0881
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
liuR-liuA-liuB-liuC-liuD-liuE-aacS-IL0880-etfD -62 6.4 CTTTACGTTAACGTAAAC IL0873
Pseudoalteromonas haloplanktis TAC125
Position: -190
Score: 4.82848
Sequence: GCTGACGTGCACGTCAAC
Position: -141
Score: 4.6074
Sequence: ATTGACGTAAACATCAAC
Locus tag: PSHAa1619
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD -190 4.8 GCTGACGTGCACGTCAAC PSHAa1619
-141 4.6 ATTGACGTAAACATCAAC
Pseudoalteromonas tunicata D2
Position: -104
Score: 5.6789
Sequence: GTTGACGTAAACGTCAAC
Locus tag: PTD2_19430
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD -104 5.7 GTTGACGTAAACGTCAAC PTD2_19430
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