Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing liuD gene

Properties
Regulog: LiuR - Alteromonadales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Built upon 65 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Alteromonadales bacterium TW-7
Position: -59
Score: 6.04884
Sequence: CTTTACCTTTACGTAAAC
Locus tag: ATW7_12583
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: ATW7_12578
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: ATW7_12573
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: ATW7_12568
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: ATW7_12563
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: ATW7_12558
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: ATW7_12553
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: ATW7_12548
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC ATW7_12583
Alteromonas macleodii 'Deep ecotype'
Position: -164
Score: 5.91288
Sequence: CTTTACCTTAACGTAAAA
Position: -142
Score: 5.51502
Sequence: ATTAACGTTAACGTAAAC
Locus tag: MADE_02411
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: MADE_02412
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: MADE_02413
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: MADE_02414
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: MADE_02415
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: MADE_02416
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR-liuA-liuB-liuC-liuD-liuE -164 5.9 CTTTACCTTAACGTAAAA MADE_02411
-142 5.5 ATTAACGTTAACGTAAAC
Colwellia psychrerythraea 34H
Position: -73
Score: 6.38125
Sequence: CTTTACGTTAACGTAAAC
Position: -67
Score: 4.66107
Sequence: GTTAACGTAAACTTAATA
Locus tag: CPS_1604
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: CPS_1603
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: CPS_1602
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: CPS_1601
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: CPS_1600
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: CPS_1599
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: CPS_1598
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: CPS_1597
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -73 6.4 CTTTACGTTAACGTAAAC CPS_1604
-67 4.7 GTTAACGTAAACTTAATA
Idiomarina baltica OS145
Position: -61
Score: 6.38125
Sequence: CTTTACGTTAACGTAAAC
Locus tag: OS145_12909
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: OS145_12904
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: OS145_12899
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: OS145_12894
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: OS145_12889
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: OS145_12884
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: OS145_12879
Name: aacS
Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Locus tag: OS145_12874
Name: IL0880
Funciton: Sensory box/GGDEF family protein
Locus tag: OS145_12869
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
liuR-liuA-liuB-liuC-liuD-liuE-aacS-IL0880-etfD -61 6.4 CTTTACGTTAACGTAAAC OS145_12909
Idiomarina loihiensis L2TR
Position: -62
Score: 6.38125
Sequence: CTTTACGTTAACGTAAAC
Locus tag: IL0873
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: IL0874
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: IL0875
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: IL0876
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: IL0877
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: IL0878
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: IL0879
Name: aacS
Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Locus tag: IL0880
Name: IL0880
Funciton: Sensory box/GGDEF family protein
Locus tag: IL0881
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
liuR-liuA-liuB-liuC-liuD-liuE-aacS-IL0880-etfD -62 6.4 CTTTACGTTAACGTAAAC IL0873
Pseudoalteromonas atlantica T6c
Position: -109
Score: 5.68781
Sequence: CTTTACCTTTACGTTAAG
Position: -86
Score: 6.07242
Sequence: CTTTACGTAAACGTAAAG
Locus tag: Patl_2924
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Patl_2925
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Patl_2926
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Patl_2927
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Patl_2928
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Patl_2929
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
liuR-liuA-liuB-liuC-liuD-liuE -109 5.7 CTTTACCTTTACGTTAAG Patl_2924
-86 6.1 CTTTACGTAAACGTAAAG
Pseudoalteromonas haloplanktis TAC125
Position: -60
Score: 6.04884
Sequence: CTTTACCTTTACGTAAAC
Locus tag: PSHAa1453
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: PSHAa1452
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PSHAa1451
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PSHAa1450
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PSHAa1449
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: PSHAa1448
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: PSHAa1447
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: PSHAa1446
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -60 6 CTTTACCTTTACGTAAAC PSHAa1453
Pseudoalteromonas tunicata D2
Position: -55
Score: 6.04884
Sequence: CTTTACCTTTACGTAAAC
Locus tag: PTD2_19757
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: PTD2_19762
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PTD2_19767
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PTD2_19772
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PTD2_19777
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: PTD2_19782
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: PTD2_19787
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: PTD2_19792
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -55 6 CTTTACCTTTACGTAAAC PTD2_19757
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