Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ivdA gene

Properties
Regulog: LiuR - Alteromonadales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Built upon 65 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Alteromonadales bacterium TW-7
Position: -116
Score: 5.98114
Sequence: GTTGACGTTAGCGTAAAC
Locus tag: ATW7_12588
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: ATW7_12593
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: ATW7_12598
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: ATW7_12603
Name: ivdD
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: ATW7_12608
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: ATW7_12613
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: ATW7_12618
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -116 6 GTTGACGTTAGCGTAAAC ATW7_12588
Alteromonas macleodii 'Deep ecotype'
Position: -98
Score: 5.63225
Sequence: GTTTACGTTAACGTTAAT
Position: -76
Score: 5.66322
Sequence: TTTTACGTTAAGGTAAAG
Locus tag: MADE_02410
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdA -98 5.6 GTTTACGTTAACGTTAAT MADE_02410
-76 5.7 TTTTACGTTAAGGTAAAG
Colwellia psychrerythraea 34H
Position: -91
Score: 4.83626
Sequence: GTTGACGTAAACTTAAAT
Locus tag: CPS_1605
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdA -91 4.8 GTTGACGTAAACTTAAAT CPS_1605
Idiomarina baltica OS145
Position: -34
Score: 6.37434
Sequence: GTTTACGTTAACGTAAAG
Locus tag: OS145_12914
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdA -34 6.4 GTTTACGTTAACGTAAAG OS145_12914
Idiomarina loihiensis L2TR
Position: -34
Score: 6.37434
Sequence: GTTTACGTTAACGTAAAG
Locus tag: IL0872
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdA -34 6.4 GTTTACGTTAACGTAAAG IL0872
Pseudoalteromonas atlantica T6c
Position: -211
Score: 6.26839
Sequence: CTTTACGTTTACGTAAAG
Position: -188
Score: 5.22443
Sequence: CTTAACGTAAAGGTAAAG
Locus tag: Patl_2923
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdA -211 6.3 CTTTACGTTTACGTAAAG Patl_2923
-188 5.2 CTTAACGTAAAGGTAAAG
Pseudoalteromonas haloplanktis TAC125
Position: -113
Score: 5.29397
Sequence: ATTTACGTTGGCGTAAAC
Locus tag: PSHAa1454
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: PSHAa1455
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: PSHAa1456
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: PSHAa1457
Name: ivdD
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: PSHAa1458
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: PSHAa1459
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: PSHAa1460
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -113 5.3 ATTTACGTTGGCGTAAAC PSHAa1454
Pseudoalteromonas tunicata D2
Position: -66
Score: 5.29397
Sequence: ATTTACGTTGGCGTAAAC
Locus tag: PTD2_19752
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: PTD2_19747
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: PTD2_19742
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: PTD2_19737
Name: ivdD
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: PTD2_19732
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: PTD2_19727
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: PTD2_19722
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -66 5.3 ATTTACGTTGGCGTAAAC PTD2_19752
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