Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nirV gene

Properties
Regulog: NnrR - Rhizobiales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria
Built upon 110 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Agrobacterium tumefaciens str. C58 (Cereon)
Position: -181
Score: 4.84965
Sequence: CTTTGCGAACAGGCAAAG
Position: -95
Score: 4.52797
Sequence: GTTTGTTCCATCTCAAAT
Locus tag: Atu4382
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: Atu4381
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: Atu4380
Name: nnrR
Funciton: Nitric oxide-responding transcriptional regulator NnrR, Crp family
nirK-nirV-nnrR -181 4.8 CTTTGCGAACAGGCAAAG Atu4382
-95 4.5 GTTTGTTCCATCTCAAAT
Bradyrhizobium japonicum USDA 110
Position: -117
Score: 5.02105
Sequence: CCTTGCGCTCGCGCAAAG
Position: -79
Score: 5.052
Sequence: CATTGCGCTCGCGCAAAG
Position: -76
Score: 4.43953
Sequence: GCTTGTTGCAGCGCAAAC
Locus tag: bsr7087
Name: null
Funciton: bsr7087; unknown protein
Locus tag: blr7088
Name: PF04314
Funciton: Copper metallochaperone, bacterial analog of Cox17 protein
Locus tag: blr7089
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: blr7090
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
bsr7087-PF04314-nirK-nirV -117 5 CCTTGCGCTCGCGCAAAG bsr7087
-79 5.1 CATTGCGCTCGCGCAAAG
-76 4.4 GCTTGTTGCAGCGCAAAC
Bradyrhizobium sp. BTAi1
Position: -83
Score: 4.31741
Sequence: GCTTGTTGCAGCACAAAC
Locus tag: BBta_6826
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: BBta_6827
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -83 4.3 GCTTGTTGCAGCACAAAC BBta_6826
Mesorhizobium sp. BNC1
Position: -234
Score: 4.15318
Sequence: CTTTGCGCGACGGGAACT
Position: -86
Score: 5.51718
Sequence: GTTTGCGCCAGCGCAAAG
Locus tag: Meso_4273
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: Meso_4272
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -234 4.2 CTTTGCGCGACGGGAACT Meso_4273
-86 5.5 GTTTGCGCCAGCGCAAAG
Rhizobium etli CFN 42
Position: -148
Score: 4.65658
Sequence: CGTTGAGATTACGCAAAG
Position: -117
Score: 5.23563
Sequence: CTTTGTGCCGGCACAAAC
Position: -94
Score: 5.06364
Sequence: GTTTGCGCCACGTCAAAG
Locus tag: RHE_PF00525
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: RHE_PF00526
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: RHE_PF00527
Name: nnrR
Funciton: Nitric oxide-responding transcriptional regulator NnrR, Crp family
Locus tag: RHE_PF00528
Name: nnrU
Funciton: NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor)
nirK-nirV-nnrR-nnrU -148 4.7 CGTTGAGATTACGCAAAG RHE_PF00525
-117 5.2 CTTTGTGCCGGCACAAAC
-94 5.1 GTTTGCGCCACGTCAAAG
Rhizobium sp. NGR234
Position: -195
Score: 4.66159
Sequence: CTTTGACAATTGGCAAAG
Position: -91
Score: 4.66072
Sequence: ATTTGTTCCACCTCAAAG
Position: -91
Score: 4.3553
Sequence: GTTTGACAGACATCAAAG
Locus tag: NGR_c09950
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: NGR_c09960
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
Locus tag: NGR_c09970
Name: nnrR
Funciton: Nitric oxide-responding transcriptional regulator NnrR, Crp family
Locus tag: NGR_c09980
Name: azu1
Funciton: Pseudoazurin precursor
nirK-nirV-nnrR-azu1 -195 4.7 CTTTGACAATTGGCAAAG NGR_c09950
-91 4.7 ATTTGTTCCACCTCAAAG
-91 4.4 GTTTGACAGACATCAAAG
Rhodopseudomonas palustris CGA009
Position: -190
Score: 4.45254
Sequence: CTTTGTCGCGCAACAACG
Position: -84
Score: 4.57165
Sequence: GCTTGTGCTGGGACAAAC
Locus tag: RPA4145
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: RPA4146
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -190 4.5 CTTTGTCGCGCAACAACG RPA4145
-84 4.6 GCTTGTGCTGGGACAAAC
Sinorhizobium meliloti 1021
Position: -191
Score: 4.66159
Sequence: CTTTGACAATTGGCAAAG
Position: -90
Score: 4.8384
Sequence: GTTTGTTCCACCTCAAAG
Locus tag: SMa1250
Name: nirK
Funciton: Copper-containing nitrite reductase (EC 1.7.2.1)
Locus tag: SMa1247
Name: nirV
Funciton: Nitrite reductase accessory protein NirV
nirK-nirV -191 4.7 CTTTGACAATTGGCAAAG SMa1250
-90 4.8 GTTTGTTCCACCTCAAAG
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