Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nikB gene

Properties
Regulog: NikR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Phylum: Proteobacteria/gamma
Built upon 8 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella halifaxensis HAW-EB4
Position: -49
Score: 6.82165
Sequence: GTGTGACGATTCGAAAAATAGTATTAC
Locus tag: Shal_3728
Name: nikA
Funciton: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
Locus tag: Shal_3727
Name: nikB
Funciton: Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)
Locus tag: Shal_3726
Name: nikC
Funciton: Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
Locus tag: Shal_3725
Name: nikD
Funciton: Nickel transport system ATP-binding protein nikD2 (TC 3.A.1.5.2)
Locus tag: Shal_3724
Name: nikE
Funciton: Nickel transport system ATP-binding protein nikE2 (TC 3.A.1.5.2)
nikA-nikB-nikC-nikD-nikE -49 6.8 GTGTGACGATTCGAAAAATAGTATTAC Shal_3728
Shewanella pealeana ATCC 700345
Position: -49
Score: 7.10802
Sequence: GTGTGACGATTCTAAAAATAGTATTAC
Locus tag: Spea_3644
Name: nikA
Funciton: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
Locus tag: Spea_3643
Name: nikB
Funciton: Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)
Locus tag: Spea_3642
Name: nikC
Funciton: Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
Locus tag: Spea_3641
Name: nikD
Funciton: Nickel transport system ATP-binding protein nikD2 (TC 3.A.1.5.2)
Locus tag: Spea_3640
Name: nikE
Funciton: Nickel transport system ATP-binding protein nikE2 (TC 3.A.1.5.2)
nikA-nikB-nikC-nikD-nikE -49 7.1 GTGTGACGATTCTAAAAATAGTATTAC Spea_3644
Shewanella sediminis HAW-EB3
Position: -56
Score: 7.03082
Sequence: GTATTACGAATCTAAAAGTAGTATTAC
Locus tag: Ssed_1675
Name: nikA
Funciton: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
Locus tag: Ssed_1676
Name: nikB
Funciton: Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)
Locus tag: Ssed_1677
Name: nikC
Funciton: Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
Locus tag: Ssed_1678
Name: nikD
Funciton: Nickel transport system ATP-binding protein nikD2 (TC 3.A.1.5.2)
Locus tag: Ssed_1679
Name: nikE
Funciton: Nickel transport system ATP-binding protein nikE2 (TC 3.A.1.5.2)
nikA-nikB-nikC-nikD-nikE -56 7 GTATTACGAATCTAAAAGTAGTATTAC Ssed_1675