Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing bioD gene

Properties
Regulog: BirA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Proteobacteria/gamma
Built upon 32 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -86
Score: 7.81242
Sequence: CAGTAAACC-(15)-CGTTGACAG
Locus tag: Sama_1438
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sama_1439
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sama_1440
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Sama_1441
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -86 7.8 CAGTAAACC-(15)-CGTTGACAG Sama_1438
Shewanella baltica OS155
Position: -89
Score: 7.52775
Sequence: TAGTAAACT-(15)-CGTTGACAG
Locus tag: Sbal_1758
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sbal_1759
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sbal_1760
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Sbal_1761
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -89 7.5 TAGTAAACT-(15)-CGTTGACAG Sbal_1758
Shewanella denitrificans OS217
Position: -86
Score: 6.75418
Sequence: TaGTcAAgt-(15)-cGTTgACAg
Locus tag: Sden_1658
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sden_1659
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sden_1660
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Sden_1661
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -86 6.8 TaGTcAAgt-(15)-cGTTgACAg Sden_1658
Shewanella frigidimarina NCIMB 400
Position: -87
Score: 7.29355
Sequence: TAGTAAAGC-(15)-CGTTGACAG
Locus tag: Sfri_1475
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sfri_1476
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sfri_1477
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Sfri_1478
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -87 7.3 TAGTAAAGC-(15)-CGTTGACAG Sfri_1475
Shewanella halifaxensis HAW-EB4
Position: -236
Score: 7.29355
Sequence: TAGTAAACC-(15)-CATTGACAG
Locus tag: Shal_2477
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shal_2476
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shal_2475
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Shal_2474
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -236 7.3 TAGTAAACC-(15)-CATTGACAG Shal_2477
Shewanella loihica PV-4
Position: -122
Score: 7.95601
Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Shew_1719
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shew_1720
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shew_1721
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Shew_1722
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -122 8 TAGTAAACC-(15)-CGTTGACAG Shew_1719
Shewanella pealeana ATCC 700345
Position: -238
Score: 7.29355
Sequence: TAGTAAACC-(15)-CATTGACAG
Locus tag: Spea_1801
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Spea_1802
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Spea_1803
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Spea_1804
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -238 7.3 TAGTAAACC-(15)-CATTGACAG Spea_1801
Shewanella piezotolerans WP3
Position: -242
Score: 7.29355
Sequence: TAGTAAACC-(15)-CATTGACAG
Locus tag: swp_2928
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: swp_2927
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: swp_2926
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: swp_2925
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -242 7.3 TAGTAAACC-(15)-CATTGACAG swp_2928
Shewanella putrefaciens CN-32
Position: -90
Score: 7.52775
Sequence: TAGTAAACT-(15)-CGTTGACAG
Locus tag: Sputcn32_2345
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sputcn32_2344
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sputcn32_2343
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Sputcn32_2342
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -90 7.5 TAGTAAACT-(15)-CGTTGACAG Sputcn32_2345
Shewanella sediminis HAW-EB3
Position: -99
Score: 7.95601
Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Ssed_2776
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Ssed_2775
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Ssed_2774
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Ssed_2773
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -99 8 TAGTAAACC-(15)-CGTTGACAG Ssed_2776
Shewanella sp ANA-3
Position: -89
Score: 7.84342
Sequence: TGGTAAACC-(15)-CGTTGACAG
Locus tag: Shewana3_2519
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shewana3_2518
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shewana3_2517
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Shewana3_2516
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -89 7.8 TGGTAAACC-(15)-CGTTGACAG Shewana3_2519
Shewanella sp MR-4
Position: -89
Score: 7.84342
Sequence: TGGTAAACC-(15)-CGTTGACAG
Locus tag: Shewmr4_2359
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shewmr4_2358
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shewmr4_2357
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Shewmr4_2356
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -89 7.8 TGGTAAACC-(15)-CGTTGACAG Shewmr4_2359
Shewanella sp MR-7
Position: -89
Score: 7.84342
Sequence: TGGTAAACC-(15)-CGTTGACAG
Locus tag: Shewmr7_2431
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shewmr7_2430
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shewmr7_2429
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Shewmr7_2428
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -89 7.8 TGGTAAACC-(15)-CGTTGACAG Shewmr7_2431
Shewanella sp W3-18-1
Position: -90
Score: 7.52775
Sequence: TAGTAAACT-(15)-CGTTGACAG
Locus tag: Sputw3181_1663
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sputw3181_1664
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sputw3181_1665
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Sputw3181_1666
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -90 7.5 TAGTAAACT-(15)-CGTTGACAG Sputw3181_1663
Shewanella woodyi ATCC 51908
Position: -99
Score: 7.95601
Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Swoo_1866
Name: bioB
Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Swoo_1867
Name: bioF
Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Swoo_1868
Name: bioC
Funciton: Biotin synthesis protein bioC
Locus tag: Swoo_1869
Name: bioD
Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
bioB-bioF-bioC-bioD -99 8 TAGTAAACC-(15)-CGTTGACAG Swoo_1866
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