Orthologous regulated operons containing bioB gene
| Regulog: | BirA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella amazonensis SB2B | ||||
|
Position: -86
Score: 7.81242 Sequence: CAGTAAACC-(15)-CGTTGACAG
Locus tag: Sama_1438
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sama_1439
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sama_1440
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Sama_1441
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -86 | 7.8 | CAGTAAACC-(15)-CGTTGACAG | Sama_1438 |
| Shewanella baltica OS155 | ||||
|
Position: -89
Score: 7.52775 Sequence: TAGTAAACT-(15)-CGTTGACAG
Locus tag: Sbal_1758
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sbal_1759
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sbal_1760
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Sbal_1761
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -89 | 7.5 | TAGTAAACT-(15)-CGTTGACAG | Sbal_1758 |
| Shewanella denitrificans OS217 | ||||
|
Position: -86
Score: 6.75418 Sequence: TaGTcAAgt-(15)-cGTTgACAg
Locus tag: Sden_1658
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sden_1659
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sden_1660
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Sden_1661
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -86 | 6.8 | TaGTcAAgt-(15)-cGTTgACAg | Sden_1658 |
| Shewanella frigidimarina NCIMB 400 | ||||
|
Position: -87
Score: 7.29355 Sequence: TAGTAAAGC-(15)-CGTTGACAG
Locus tag: Sfri_1475
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sfri_1476
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sfri_1477
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Sfri_1478
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -87 | 7.3 | TAGTAAAGC-(15)-CGTTGACAG | Sfri_1475 |
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -236
Score: 7.29355 Sequence: TAGTAAACC-(15)-CATTGACAG
Locus tag: Shal_2477
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shal_2476
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shal_2475
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Shal_2474
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -236 | 7.3 | TAGTAAACC-(15)-CATTGACAG | Shal_2477 |
| Shewanella loihica PV-4 | ||||
|
Position: -122
Score: 7.95601 Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Shew_1719
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shew_1720
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shew_1721
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Shew_1722
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -122 | 8 | TAGTAAACC-(15)-CGTTGACAG | Shew_1719 |
| Shewanella oneidensis MR-1 | ||||
|
Position: -89
Score: 7.84342 Sequence: TGGTAAACC-(15)-CGTTGACAG
Locus tag: SO_2740
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6) |
||||
| bioB | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG | SO_2740 |
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -238
Score: 7.29355 Sequence: TAGTAAACC-(15)-CATTGACAG
Locus tag: Spea_1801
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Spea_1802
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Spea_1803
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Spea_1804
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -238 | 7.3 | TAGTAAACC-(15)-CATTGACAG | Spea_1801 |
| Shewanella piezotolerans WP3 | ||||
|
Position: -242
Score: 7.29355 Sequence: TAGTAAACC-(15)-CATTGACAG
Locus tag: swp_2928
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: swp_2927
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: swp_2926
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: swp_2925
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -242 | 7.3 | TAGTAAACC-(15)-CATTGACAG | swp_2928 |
| Shewanella putrefaciens CN-32 | ||||
|
Position: -90
Score: 7.52775 Sequence: TAGTAAACT-(15)-CGTTGACAG
Locus tag: Sputcn32_2345
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sputcn32_2344
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sputcn32_2343
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Sputcn32_2342
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -90 | 7.5 | TAGTAAACT-(15)-CGTTGACAG | Sputcn32_2345 |
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -99
Score: 7.95601 Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Ssed_2776
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Ssed_2775
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Ssed_2774
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Ssed_2773
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -99 | 8 | TAGTAAACC-(15)-CGTTGACAG | Ssed_2776 |
| Shewanella sp ANA-3 | ||||
|
Position: -89
Score: 7.84342 Sequence: TGGTAAACC-(15)-CGTTGACAG
Locus tag: Shewana3_2519
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shewana3_2518
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shewana3_2517
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Shewana3_2516
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG | Shewana3_2519 |
| Shewanella sp MR-4 | ||||
|
Position: -89
Score: 7.84342 Sequence: TGGTAAACC-(15)-CGTTGACAG
Locus tag: Shewmr4_2359
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shewmr4_2358
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shewmr4_2357
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Shewmr4_2356
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG | Shewmr4_2359 |
| Shewanella sp MR-7 | ||||
|
Position: -89
Score: 7.84342 Sequence: TGGTAAACC-(15)-CGTTGACAG
Locus tag: Shewmr7_2431
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Shewmr7_2430
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Shewmr7_2429
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Shewmr7_2428
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -89 | 7.8 | TGGTAAACC-(15)-CGTTGACAG | Shewmr7_2431 |
| Shewanella sp W3-18-1 | ||||
|
Position: -90
Score: 7.52775 Sequence: TAGTAAACT-(15)-CGTTGACAG
Locus tag: Sputw3181_1663
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Sputw3181_1664
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Sputw3181_1665
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Sputw3181_1666
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -90 | 7.5 | TAGTAAACT-(15)-CGTTGACAG | Sputw3181_1663 |
| Shewanella woodyi ATCC 51908 | ||||
|
Position: -99
Score: 7.95601 Sequence: TAGTAAACC-(15)-CGTTGACAG
Locus tag: Swoo_1866
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Swoo_1867
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Swoo_1868
Name: bioC Funciton: Biotin synthesis protein bioC
Locus tag: Swoo_1869
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3) |
||||
| bioB-bioF-bioC-bioD | -99 | 8 | TAGTAAACC-(15)-CGTTGACAG | Swoo_1866 |