Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ntrC gene

Properties
Regulog: NtrC - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Built upon 94 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -51
Score: 6.28406
Sequence: TGCACCATATTGGTGCA
Position: -38
Score: 6.28406
Sequence: TGCACCATATTGGTGCA
Locus tag: Sama_3426
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Sama_3427
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -51 6.3 TGCACCATATTGGTGCA Sama_3426
-38 6.3 TGCACCATATTGGTGCA
Shewanella baltica OS155
Position: -52
Score: 5.48659
Sequence: TGCACCAGATTGGCGCA
Position: -39
Score: 5.76968
Sequence: CGCACCATAGTGGTGCA
Locus tag: Sbal_0267
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Sbal_0266
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 5.5 TGCACCAGATTGGCGCA Sbal_0267
-39 5.8 CGCACCATAGTGGTGCA
Shewanella denitrificans OS217
Position: -79
Score: 5.99901
Sequence: TGCACCATAGTGGTGCA
Position: -52
Score: 5.76968
Sequence: TGCACCACAATGGTGCG
Locus tag: Sden_3457
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Sden_3458
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -79 6 TGCACCATAGTGGTGCA Sden_3457
-52 5.8 TGCACCACAATGGTGCG
Shewanella frigidimarina NCIMB 400
Position: -50
Score: 6.10351
Sequence: CGCACCAAATTGGTGCA
Position: -37
Score: 5.66686
Sequence: TGCATCATAATGGTGCA
Locus tag: Sfri_0321
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Sfri_0320
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -50 6.1 CGCACCAAATTGGTGCA Sfri_0321
-37 5.7 TGCATCATAATGGTGCA
Shewanella halifaxensis HAW-EB4
Position: -79
Score: 6.04777
Sequence: TGCACCACTTTGGTGCA
Position: -66
Score: 5.76968
Sequence: TGCACCATAGTGGTGCG
Locus tag: Shal_0342
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Shal_0341
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -79 6 TGCACCACTTTGGTGCA Shal_0342
-66 5.8 TGCACCATAGTGGTGCG
Shewanella loihica PV-4
Position: -52
Score: 6.33283
Sequence: TGCACCAAATTGGTGCA
Position: -39
Score: 6.2353
Sequence: TGCACCATTATGGTGCA
Locus tag: Shew_3560
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Shew_3561
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 6.3 TGCACCAAATTGGTGCA Shew_3560
-39 6.2 TGCACCATTATGGTGCA
Shewanella oneidensis MR-1
Position: -52
Score: 6.02353
Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 4.90145
Sequence: TGCAACATAAGGGTGCA
Locus tag: SO_4471
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: SO_4472
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 6 TGCACCAAATCGGTGCA SO_4471
-39 4.9 TGCAACATAAGGGTGCA
Shewanella pealeana ATCC 700345
Position: -79
Score: 5.97476
Sequence: TGCACCATTTCGGTGCA
Locus tag: Spea_3929
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Spea_3930
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -79 6 TGCACCATTTCGGTGCA Spea_3929
Shewanella piezotolerans WP3
Position: -79
Score: 6.05474
Sequence: CGCACCATTTTGGTGCA
Position: -66
Score: 5.99901
Sequence: TGCACCATAGTGGTGCA
Position: -39
Score: 4.80326
Sequence: CGTTCCAAAATGGTGCA
Locus tag: swp_0250
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: swp_0249
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -79 6.1 CGCACCATTTTGGTGCA swp_0250
-66 6 TGCACCATAGTGGTGCA
-39 4.8 CGTTCCAAAATGGTGCA
Shewanella putrefaciens CN-32
Position: -52
Score: 6.02353
Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 4.96112
Sequence: TGCATCATGTTGATGCA
Locus tag: Sputcn32_0372
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Sputcn32_0371
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 6 TGCACCAAATCGGTGCA Sputcn32_0372
-39 5 TGCATCATGTTGATGCA
Shewanella sediminis HAW-EB3
Position: -51
Score: 6.33283
Sequence: TGCACCAATTTGGTGCA
Position: -38
Score: 6.04924
Sequence: TGCACCATGATGGTGCA
Locus tag: Ssed_0283
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Ssed_0282
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -51 6.3 TGCACCAATTTGGTGCA Ssed_0283
-38 6 TGCACCATGATGGTGCA
Shewanella sp ANA-3
Position: -52
Score: 6.02353
Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 5.54852
Sequence: TGCAACATAATGGTGCA
Locus tag: Shewana3_0259
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Shewana3_0258
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 6 TGCACCAAATCGGTGCA Shewana3_0259
-39 5.5 TGCAACATAATGGTGCA
Shewanella sp MR-4
Position: -52
Score: 6.02353
Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 5.54852
Sequence: TGCAACATAATGGTGCA
Locus tag: Shewmr4_0258
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Shewmr4_0257
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 6 TGCACCAAATCGGTGCA Shewmr4_0258
-39 5.5 TGCAACATAATGGTGCA
Shewanella sp MR-7
Position: -52
Score: 6.02353
Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 5.54852
Sequence: TGCAACATAATGGTGCA
Locus tag: Shewmr7_3763
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Shewmr7_3764
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 6 TGCACCAAATCGGTGCA Shewmr7_3763
-39 5.5 TGCAACATAATGGTGCA
Shewanella sp W3-18-1
Position: -52
Score: 6.02353
Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 4.96112
Sequence: TGCATCATGTTGATGCA
Locus tag: Sputw3181_0222
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Sputw3181_0221
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -52 6 TGCACCAAATCGGTGCA Sputw3181_0222
-39 5 TGCATCATGTTGATGCA
Shewanella woodyi ATCC 51908
Position: -51
Score: 5.62294
Sequence: TGCACTAGTTTGGTGCA
Position: -38
Score: 6.2353
Sequence: TGCACCATAATGGTGCA
Locus tag: Swoo_4650
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Swoo_4651
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB-ntrC -51 5.6 TGCACTAGTTTGGTGCA Swoo_4650
-38 6.2 TGCACCATAATGGTGCA
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