Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing liuB gene

Properties
Regulog: LiuR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Built upon 134 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -65
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sama_1363
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sama_1362
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sama_1361
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sama_1360
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sama_1359
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sama_1358
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sama_1357
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sama_1356
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -65 6 CTTTACCTTTACGTAAAC Sama_1363
Shewanella baltica OS155
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sbal_2827
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sbal_2828
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sbal_2829
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sbal_2830
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sbal_2831
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sbal_2832
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sbal_2833
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sbal_2834
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC Sbal_2827
Shewanella denitrificans OS217
Position: -58
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sden_2244
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sden_2245
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sden_2246
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sden_2247
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sden_2248
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sden_2249
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sden_2250
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sden_2251
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sden_2252
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuD-liuE-liuF-liuG -58 6 CTTTACCTTTACGTAAAC Sden_2244
Shewanella frigidimarina NCIMB 400
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sfri_2726
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sfri_2727
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sfri_2728
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sfri_2729
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sfri_2730
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sfri_2731
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sfri_2732
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sfri_2733
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC Sfri_2726
Shewanella halifaxensis HAW-EB4
Position: -62
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Shal_2901
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Shal_2902
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Shal_2903
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Shal_2904
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Shal_2905
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shal_2906
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shal_2907
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Shal_2908
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Shal_2909
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuD-liuE-liuF-liuG -62 6 CTTTACCTTTACGTAAAC Shal_2901
Shewanella loihica PV-4
Position: -63
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Shew_2569
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Shew_2570
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Shew_2571
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Shew_2572
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Shew_2573
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shew_2574
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Shew_2575
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Shew_2576
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -63 6 CTTTACCTTTACGTAAAC Shew_2569
Shewanella oneidensis MR-1
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: SO_1898
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: SO_1897
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: SO_1896
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: SO_1895
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: SO_1894
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: SO_1893
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: SO_1892
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: SO_1891
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC SO_1898
Shewanella pealeana ATCC 700345
Position: -63
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Spea_2796
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Spea_2797
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Spea_2798
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Spea_2799
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Spea_2800
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Spea_2802
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Spea_2803
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Spea_2804
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -63 6 CTTTACCTTTACGTAAAC Spea_2796
Shewanella piezotolerans WP3
Position: -28
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: swp_3441
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: swp_3442
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: swp_3443
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: swp_3444
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: swp_3445
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: swp_3446
Name: null
Funciton: hypothetical protein swp_3446
Locus tag: swp_3448
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
liuR-liuA-liuB-liuC-liuD-swp_3446-liuE -28 6 CTTTACCTTTACGTAAAC swp_3441
Shewanella putrefaciens CN-32
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sputcn32_1720
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sputcn32_1719
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sputcn32_1718
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sputcn32_1717
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sputcn32_1716
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sputcn32_1715
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sputcn32_1714
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sputcn32_1713
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC Sputcn32_1720
Shewanella sediminis HAW-EB3
Position: -60
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Ssed_1459
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Ssed_1458
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Ssed_1457
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Ssed_1456
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Ssed_1455
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Ssed_1454
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Ssed_1453
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Ssed_1452
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -60 6 CTTTACCTTTACGTAAAC Ssed_1459
Shewanella sp ANA-3
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Shewana3_1673
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Shewana3_1672
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Shewana3_1671
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Shewana3_1670
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Shewana3_1669
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shewana3_1668
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Shewana3_1667
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Shewana3_1666
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC Shewana3_1673
Shewanella sp MR-4
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Shewmr4_2321
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Shewmr4_2322
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Shewmr4_2323
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Shewmr4_2324
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Shewmr4_2325
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shewmr4_2326
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Shewmr4_2327
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Shewmr4_2328
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC Shewmr4_2321
Shewanella sp MR-7
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Shewmr7_2393
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Shewmr7_2394
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Shewmr7_2395
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Shewmr7_2396
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Shewmr7_2397
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shewmr7_2398
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Shewmr7_2399
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Shewmr7_2400
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC Shewmr7_2393
Shewanella sp W3-18-1
Position: -59
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sputw3181_2305
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sputw3181_2306
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sputw3181_2307
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sputw3181_2308
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sputw3181_2309
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sputw3181_2310
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sputw3181_2311
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sputw3181_2312
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -59 6 CTTTACCTTTACGTAAAC Sputw3181_2305
Shewanella woodyi ATCC 51908
Position: -61
Score: 6.00799
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Swoo_3222
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Swoo_3223
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Swoo_3224
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Swoo_3225
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Swoo_3226
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Swoo_3227
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Swoo_3228
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Swoo_3229
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR-liuA-liuB-liuC-liuD-liuE-liuF-liuG -61 6 CTTTACCTTTACGTAAAC Swoo_3222
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