Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ivdF gene

Properties
Regulog: LiuR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Built upon 134 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -110
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Sama_1375
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sama_1376
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sama_1377
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sama_1378
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Sama_1379
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sama_1380
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sama_1381
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -110 5.9 CTTTACGTTCGCGTAAAC Sama_1375
Shewanella baltica OS155
Position: -100
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Sbal_1495
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sbal_1496
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sbal_1497
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sbal_1498
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Sbal_1499
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sbal_1500
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sbal_1501
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -100 5.9 CTTTACGTTCGCGTAAAC Sbal_1495
Shewanella denitrificans OS217
Position: -97
Score: 6.19983
Sequence: CTTTACGTTAGCGTAAAC
Locus tag: Sden_1943
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sden_1942
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sden_1941
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sden_1940
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Sden_1939
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sden_1938
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sden_1937
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -97 6.2 CTTTACGTTAGCGTAAAC Sden_1943
Shewanella frigidimarina NCIMB 400
Position: -78
Score: 5.5543
Sequence: CTTTACGTTCGCGTCAAC
Locus tag: Sfri_1338
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sfri_1339
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sfri_1340
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sfri_1341
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Sfri_1342
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sfri_1343
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sfri_1344
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -78 5.6 CTTTACGTTCGCGTCAAC Sfri_1338
Shewanella halifaxensis HAW-EB4
Position: -168
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Shal_2878
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Shal_2877
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Shal_2876
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Shal_2875
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Shal_2874
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Shal_2873
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Shal_2872
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -168 5.9 CTTTACGTTCGCGTAAAC Shal_2878
Shewanella loihica PV-4
Position: -105
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Shew_1667
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Shew_1668
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Shew_1669
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Shew_1670
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Shew_1671
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Shew_1672
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Shew_1673
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -105 5.9 CTTTACGTTCGCGTAAAC Shew_1667
Shewanella oneidensis MR-1
Position: -96
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: SO_1677
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: SO_1678
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: SO_1679
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: SO_1680
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: SO_1681
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: SO_1682
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: SO_1683
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -96 5.9 CTTTACGTTCGCGTAAAC SO_1677
Shewanella pealeana ATCC 700345
Position: -168
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Spea_2783
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Spea_2782
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Spea_2781
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Spea_2780
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Spea_2779
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Spea_2778
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Spea_2777
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -168 5.9 CTTTACGTTCGCGTAAAC Spea_2783
Shewanella piezotolerans WP3
Position: -206
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: swp_3387
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: swp_3386
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: swp_3385
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: swp_3384
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: swp_3383
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: swp_3382
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: swp_3381
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -206 5.9 CTTTACGTTCGCGTAAAC swp_3387
Shewanella putrefaciens CN-32
Position: -104
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Sputcn32_1397
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sputcn32_1398
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sputcn32_1399
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sputcn32_1400
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Sputcn32_1401
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sputcn32_1402
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sputcn32_1403
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -104 5.9 CTTTACGTTCGCGTAAAC Sputcn32_1397
Shewanella sediminis HAW-EB3
Position: -122
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Ssed_1473
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Ssed_1474
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Ssed_1475
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Ssed_1476
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Ssed_1477
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Ssed_1478
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Ssed_1479
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -122 5.9 CTTTACGTTCGCGTAAAC Ssed_1473
Shewanella sp ANA-3
Position: -96
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Shewana3_2771
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Shewana3_2770
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Shewana3_2769
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Shewana3_2768
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Shewana3_2767
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Shewana3_2766
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Shewana3_2765
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -96 5.9 CTTTACGTTCGCGTAAAC Shewana3_2771
Shewanella sp MR-4
Position: -96
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Shewmr4_2597
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Shewmr4_2596
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Shewmr4_2595
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Shewmr4_2594
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Shewmr4_2593
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Shewmr4_2592
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Shewmr4_2591
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -96 5.9 CTTTACGTTCGCGTAAAC Shewmr4_2597
Shewanella sp MR-7
Position: -96
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Shewmr7_2664
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Shewmr7_2663
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Shewmr7_2662
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Shewmr7_2661
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Shewmr7_2660
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Shewmr7_2659
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Shewmr7_2658
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -96 5.9 CTTTACGTTCGCGTAAAC Shewmr7_2664
Shewanella sp W3-18-1
Position: -104
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Sputw3181_2704
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sputw3181_2703
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sputw3181_2702
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sputw3181_2701
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Sputw3181_2700
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sputw3181_2699
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sputw3181_2698
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -104 5.9 CTTTACGTTCGCGTAAAC Sputw3181_2704
Shewanella woodyi ATCC 51908
Position: -110
Score: 5.86431
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Swoo_3202
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Swoo_3201
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Swoo_3200
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Swoo_3199
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Swoo_3198
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Swoo_3197
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Swoo_3196
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -110 5.9 CTTTACGTTCGCGTAAAC Swoo_3202
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