Orthologous regulated operons containing ndhF3 gene

Properties
Regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria

Built upon 72 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Cyanothece sp. ATCC 51142
Position: -74 Score: 5.52754 Sequence: ATAGACTTAATTCTAT Locus tag: cce_0603 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: cce_0604 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: cce_0605 Name: cupA Funciton: CO2 uptake protein
ndhF3-ndhD3-cupA	-74	5.5	ATAGACTTAATTCTAT	cce_0603
Cyanothece sp. PCC 8801
Position: -71 Score: 5.5986 Sequence: ATAGACTAAAGTCTAT Position: -8 Score: 5.03594 Sequence: ATTGTTATATGTCTAT Locus tag: PCC8801_4247 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: PCC8801_4248 Name: ecaB2 Funciton: Periplasmic carbonic anhydrase Locus tag: PCC8801_4249 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: PCC8801_4250 Name: cupA Funciton: CO2 uptake protein
ndhF3-ecaB2-ndhD3-cupA	-71	5.6	ATAGACTAAAGTCTAT	PCC8801_4247
	-8	5	ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421
Position: -139 Score: 4.95938 Sequence: ATCTACTTTTATCTAT Locus tag: gvip132 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: gvip133 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: gvip134 Name: cupA Funciton: CO2 uptake protein Locus tag: glr1006 Name: cupS Funciton: CO2 uptake transporter, small subunit
ndhF3-ndhD3-cupA-cupS	-139	5	ATCTACTTTTATCTAT	gvip132
Microcystis aeruginosa NIES-843
Position: -71 Score: 4.89685 Sequence: ATTGACTAGAATCTAT Locus tag: MAE_15110 Name: ccmR Funciton: Carbon assimilation transcriptional regulator, LysR family Locus tag: MAE_15120 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: MAE_15130 Name: ecaB2 Funciton: Periplasmic carbonic anhydrase Locus tag: MAE_15140 Name: ndhD3 Funciton: NADH dehydrogenase subunit D
ccmR-ndhF3-ecaB2-ndhD3	-71	4.9	ATTGACTAGAATCTAT	MAE_15110
Nostoc sp. PCC 7120
Position: -245 Score: 5.85786 Sequence: ATAGATTTTTGTCTAT Locus tag: alr4156 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: alr4157 Name: ndhD3 Funciton: NADH dehydrogenase subunit D
ndhF3-ndhD3	-245	5.9	ATAGATTTTTGTCTAT	alr4156
Synechococcus sp. JA-3-3Ab
Position: -107 Score: 5.03875 Sequence: CTTGATTTTTGTCTAT Locus tag: CYA_0640 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: CYA_0639 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: CYA_0638 Name: cupA Funciton: CO2 uptake protein Locus tag: CYA_0636 Name: cupS Funciton: CO2 uptake transporter, small subunit
ndhF3-ndhD3-cupA-cupS	-107	5	CTTGATTTTTGTCTAT	CYA_0640
Synechococcus sp. PCC 7002
Position: -63 Score: 5.03591 Sequence: ATTGACTCTAGTCTAT Locus tag: SYNPCC7002_A0171 Name: ccmR Funciton: Carbon assimilation transcriptional regulator, LysR family Locus tag: SYNPCC7002_A0172 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: SYNPCC7002_A0173 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: SYNPCC7002_A0174 Name: cupA Funciton: CO2 uptake protein Locus tag: SYNPCC7002_A0175 Name: cupS Funciton: CO2 uptake transporter, small subunit
ccmR-ndhF3-ndhD3-cupA-cupS	-63	5	ATTGACTCTAGTCTAT	SYNPCC7002_A0171
Synechocystis sp. PCC 6803
Position: -204 Score: 3.87446 Sequence: ATTGTCGCTTGACTAT Locus tag: sll1732 Name: ndhF3 Funciton: NADH dehydrogenase subunit F Locus tag: sll1733 Name: ndhD3 Funciton: NADH dehydrogenase subunit D Locus tag: sll1734 Name: cupA Funciton: CO2 uptake protein Locus tag: sll1735 Name: cupS Funciton: CO2 uptake transporter, small subunit
ndhF3-ndhD3-cupA-cupS	-204	3.9	ATTGTCGCTTGACTAT	sll1732

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Orthologous regulated operons containing ndhF3 gene

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --