Orthologous regulated operons containing rafB gene

Properties
Regulog:	RafR - Bifidobacteriaceae
Regulator type:	Transcription factor
Regulator family:	ROK
Regulation mode:	activator
Biological process:	Raffinose utilization
Effector:
Phylum:	Actinobacteria

Built upon 17 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Bifidobacterium adolescentis ATCC 15703
Position: -161 Score: 5.52088 Sequence: TACTTTCCAAGAATAACAAAATA Locus tag: BAD_1574 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: BAD_1573 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: BAD_1572 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD	-161	5.5	TACTTTCCAAGAATAACAAAATA	BAD_1574
Bifidobacterium angulatum DSM 20098
Position: -230 Score: 4.20765 Sequence: TTCTTTCCTTCGATATGAAATTT Locus tag: BIFANG_00401 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: BIFANG_00400 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: BIFANG_00399 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD	-230	4.2	TTCTTTCCTTCGATATGAAATTT	BIFANG_00401
Bifidobacterium animalis subsp. lactis AD011
Position: -158 Score: 4.14775 Sequence: TAGTTTCCATGAGTATATAAATA Locus tag: BLA_1522 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: BLA_1521 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: BLA_1520 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD	-158	4.1	TAGTTTCCATGAGTATATAAATA	BLA_1522
Bifidobacterium breve DSM 20213
Position: -152 Score: 5.54311 Sequence: TTTATTGCGTTAATCACAAAATA Locus tag: BIFBRE_00616 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: BIFBRE_00615 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: BIFBRE_00614 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD	-152	5.5	TTTATTGCGTTAATCACAAAATA	BIFBRE_00616
Bifidobacterium dentium Bd1
Position: -159 Score: 5.2507 Sequence: TACTTTCTCAGAATAACAAAATC Locus tag: BDP_2226 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: BDP_2225 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: BDP_2224 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD	-159	5.3	TACTTTCTCAGAATAACAAAATC	BDP_2226
Bifidobacterium longum NCC2705
Position: -155 Score: 5.54311 Sequence: TTTATTGCGTTAATCACAAAATA Locus tag: BL1521 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: BL1522 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: BL1523 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD	-155	5.5	TTTATTGCGTTAATCACAAAATA	BL1521
Bifidobacterium longum subsp. infantis ATCC 15697
Position: -152 Score: 5.54311 Sequence: TTTATTGCGTTAATCACAAAATA Locus tag: Blon_2458 Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein Locus tag: Blon_2457 Name: rafC Funciton: Raffinose ABC transporter, permease protein 1 Locus tag: Blon_2456 Name: rafD Funciton: Raffinose ABC transporter, permease protein 2
rafB-rafC-rafD	-152	5.5	TTTATTGCGTTAATCACAAAATA	Blon_2458

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Orthologous regulated operons containing rafB gene

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --