Orthologous regulated operons containing COG3272 gene
| Regulog: | PhrR - Pseudomonadaceae |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Light-dependent DNA repair |
| Effector: | Blue light; Adenosylcobalamin |
| Phylum: | Proteobacteria/Gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Azotobacter vinelandii AvOP | ||||
|
Position: -94
Score: 5.70596 Sequence: TGTACAAACTGTTGATCATGTACA
Position: -43
Score: 4.97757 Sequence: TATACAAATCATGAAAGCTGTACA
Locus tag: Avin_41400
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Avin_41410
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Avin_41430
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
||||
| COG3272-phrR-phr | -94 | 5.7 | TGTACAAACTGTTGATCATGTACA | Avin_41400 |
| -43 | 5 | TATACAAATCATGAAAGCTGTACA | ||
| Pseudomonas aeruginosa PAO1 | ||||
|
Position: -106
Score: 5.93001 Sequence: TATACAAATACATTGACCTGTACA
Locus tag: PA4658
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PA4659
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PA4660
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
||||
| COG3272-phrR-phr | -106 | 5.9 | TATACAAATACATTGACCTGTACA | PA4658 |
| Pseudomonas entomophila L48 | ||||
|
Position: -93
Score: 5.55909 Sequence: TATACAGAAAGTAACACTTGTATA
Position: -43
Score: 4.99184 Sequence: TGTACAAACCAAGCCTTCTGTACA
Locus tag: PSEEN0883
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PSEEN0882
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PSEEN0881
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PSEEN0880
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
||||
| COG3272-phrR-phr-PF00106 | -93 | 5.6 | TATACAGAAAGTAACACTTGTATA | PSEEN0883 |
| -43 | 5 | TGTACAAACCAAGCCTTCTGTACA | ||
| Pseudomonas fluorescens Pf-5 | ||||
|
Position: -97
Score: 6.48806 Sequence: TATACAAATAATTTGACTTGTACA
Locus tag: PFL_5145
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PFL_5146
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PFL_5147
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PFL_5148
Name: PF07366 Funciton: Protein of unknown function DUF1486
Locus tag: PFL_5149
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: PFL_5150
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: PFL_5151
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: PFL_5152
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: PFL_5153
Name: PF11086 Funciton: Protein of unknown function DUF2878 |
||||
| COG3272-phrR-phr-PF07366-PF00106-PF01593-PF07103-PF02353-PF11086 | -97 | 6.5 | TATACAAATAATTTGACTTGTACA | PFL_5145 |
| Pseudomonas mendocina ymp | ||||
|
Position: -92
Score: 6.38811 Sequence: TGTACAAATCATTTGACTTGTACA
Position: -42
Score: 5.15889 Sequence: TGTACATGCACCAACATATGTACA
Locus tag: Pmen_1073
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Pmen_1072
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Pmen_1071
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Pmen_1070
Name: PF07366 Funciton: Protein of unknown function DUF1486
Locus tag: Pmen_1069
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Pmen_1068
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Pmen_1067
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Pmen_1066
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Pmen_1065
Name: PF11086 Funciton: Protein of unknown function DUF2878 |
||||
| COG3272-phrR-phr-PF07366-PF00106-PF01593-PF07103-PF02353-PF11086 | -92 | 6.4 | TGTACAAATCATTTGACTTGTACA | Pmen_1073 |
| -42 | 5.2 | TGTACATGCACCAACATATGTACA | ||
| Pseudomonas putida KT2440 | ||||
|
Position: -95
Score: 5.62387 Sequence: TATACAAAAATACTAGTTTGCATA
Position: -45
Score: 4.99403 Sequence: TGTACAAGTTTCGAGTCACGTACA
Locus tag: PP0741
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PP0740
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PP0739
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PP0738
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
||||
| COG3272-phrR-phr-PF00106 | -95 | 5.6 | TATACAAAAATACTAGTTTGCATA | PP0741 |
| -45 | 5 | TGTACAAGTTTCGAGTCACGTACA | ||
| Pseudomonas stutzeri A1501 | ||||
|
Position: -217
Score: 5.29583 Sequence: TATACATGGTTATTCGAATGTACA
Locus tag: PST_1966
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PST_1965
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PST_1964
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PST_1963
Name: PF07366 Funciton: Protein of unknown function DUF1486
Locus tag: PST_1962
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: PST_1961
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: PST_1960
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: PST_1959
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: PST_1958
Name: mcp4 Funciton: methyl-accepting chemotaxis protein |
||||
| COG3272-phrR-phr-PF07366-PF00106-PF01593-PF07103-PF02353-mcp4 | -217 | 5.3 | TATACATGGTTATTCGAATGTACA | PST_1966 |
| Pseudomonas syringae pv. tomato str. DC3000 | ||||
|
Position: -101
Score: 6.12539 Sequence: TCTACAAAGAATTTGACTTGTACA
Position: -51
Score: 4.88574 Sequence: TGTACAGCACAGTTAATCTGTACA
Locus tag: PSPTO1123
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PSPTO1122
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PSPTO1121
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PSPTO1120
Name: PF07366 Funciton: Protein of unknown function DUF1486
Locus tag: PSPTO1119
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: PSPTO1118
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: PSPTO1117
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: PSPTO1116
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: PSPTO1115
Name: PF11086 Funciton: Protein of unknown function DUF2878 |
||||
| COG3272-phrR-phr-PF07366-PF00106-PF01593-PF07103-PF02353-PF11086 | -101 | 6.1 | TCTACAAAGAATTTGACTTGTACA | PSPTO1123 |
| -51 | 4.9 | TGTACAGCACAGTTAATCTGTACA | ||