Orthologous regulated operons containing xynB gene
| Regulog: | XosR - Bifidobacteriaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Xylooligosacharides utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Bifidobacterium adolescentis ATCC 15703 | ||||
|
Position: -298
Score: 5.65185 Sequence: CGAACGAAAGTTTCGGTTT
Position: -275
Score: 5.67488 Sequence: TTTTCGAAACTTTCGATAT
Position: -141
Score: 5.39297 Sequence: AAATGGAAATTTTCGAAGG
Locus tag: BAD_0425
Name: xosA Funciton: Xylooligosacharides ABC transporter, substrate binding protein
Locus tag: BAD_0426
Name: xosB Funciton: Xylooligosacharides ABC transporter, permease protein 2
Locus tag: BAD_0427
Name: xosC Funciton: Xylooligosacharides ABC transporter, permease protein 2
Locus tag: BAD_0428
Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: BAD_0429
Name: PF03629 Funciton: protein of unknown function DUF303, acetylesterase putative |
||||
| xosA-xosB-xosC-xynB-PF03629 | -298 | 5.7 | CGAACGAAAGTTTCGGTTT | BAD_0425 |
| -275 | 5.7 | TTTTCGAAACTTTCGATAT | ||
| -141 | 5.4 | AAATGGAAATTTTCGAAGG | ||
| Bifidobacterium angulatum DSM 20098 | ||||
|
Position: -318
Score: 5.65185 Sequence: CGAACGAAAGTTTCGGTTT
Position: -295
Score: 5.67488 Sequence: TTTTCGAAACTTTCGATAT
Position: -161
Score: 5.39297 Sequence: AAATGGAAATTTTCGAAGG
Locus tag: BIFANG_00032
Name: xosA Funciton: Xylooligosacharides ABC transporter, substrate binding protein
Locus tag: BIFANG_00031
Name: xosB Funciton: Xylooligosacharides ABC transporter, permease protein 2
Locus tag: BIFANG_00030
Name: xosC Funciton: Xylooligosacharides ABC transporter, permease protein 2
Locus tag: BIFANG_00029
Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: BIFANG_00028
Name: PF03629 Funciton: protein of unknown function DUF303, acetylesterase putative |
||||
| xosA-xosB-xosC-xynB-PF03629 | -318 | 5.7 | CGAACGAAAGTTTCGGTTT | BIFANG_00032 |
| -295 | 5.7 | TTTTCGAAACTTTCGATAT | ||
| -161 | 5.4 | AAATGGAAATTTTCGAAGG | ||
| Bifidobacterium dentium Bd1 | ||||
|
Position: -329
Score: 5.73228 Sequence: AGAGCGAAAGTTTCGAATT
Position: -306
Score: 5.73456 Sequence: ATTTCGAAACTTTCGGATT
Position: -65
Score: 5.3333 Sequence: CTTTCGAAGCTTTCGTTCT
Locus tag: BDP_0565
Name: xosA Funciton: Xylooligosacharides ABC transporter, substrate binding protein
Locus tag: BDP_0566
Name: xosB Funciton: Xylooligosacharides ABC transporter, permease protein 2
Locus tag: BDP_0567
Name: xosC Funciton: Xylooligosacharides ABC transporter, permease protein 2
Locus tag: BDP_0568
Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37) |
||||
| xosA-xosB-xosC-xynB | -329 | 5.7 | AGAGCGAAAGTTTCGAATT | BDP_0565 |
| -306 | 5.7 | ATTTCGAAACTTTCGGATT | ||
| -65 | 5.3 | CTTTCGAAGCTTTCGTTCT | ||