Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nifT gene

Properties
Regulog: NifA - Rhizobiales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Phylum: Proteobacteria/alpha
Built upon 130 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azorhizobium caulinodans ORS 571
Position: -134
Score: 5.48508
Sequence: TGTCGCAAAGGCGACA
Position: -116
Score: 4.33203
Sequence: GGTCTGCTTCGCGACA
Locus tag: AZC_3409
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: AZC_3410
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: AZC_3411
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: AZC_3412
Name: nifT
Funciton: Nitrogen fixation protein NifT
iscN-nifU-nifS-nifT -134 5.5 TGTCGCAAAGGCGACA AZC_3409
-116 4.3 GGTCTGCTTCGCGACA
Bradyrhizobium sp. BTAi1
Position: -190
Score: 4.84525
Sequence: TGTCGGATTTGCGCCA
Position: -130
Score: 5.24137
Sequence: TGTCGGAAAGTCGACA
Position: -112
Score: 4.3018
Sequence: CGTCGGAAACGCCACA
Locus tag: BBta_5909
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: BBta_5908
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: BBta_5907
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: BBta_5906
Name: nifT
Funciton: Nitrogen fixation protein NifT
iscN-nifU-nifS-nifT -190 4.8 TGTCGGATTTGCGCCA BBta_5909
-130 5.2 TGTCGGAAAGTCGACA
-112 4.3 CGTCGGAAACGCCACA
Mesorhizobium loti MAFF303099
Position: -156
Score: 5.07171
Sequence: TGTCGGCGACCTGACA
Locus tag: mll5855
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: msl8750
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: mll5854
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: msl5852
Name: nifT
Funciton: Nitrogen fixation protein NifT
nifB-fdxN-nifZ-nifT -156 5.1 TGTCGGCGACCTGACA mll5855
Rhizobium sp. NGR234
Position: -144
Score: 5.23209
Sequence: TGTCGCGAATTCGACA
Locus tag: NGR_a01270
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: NGR_a01280
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: NGR_a01290
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: NGR_a01300
Name: nifT
Funciton: Nitrogen fixation protein NifT
nifB-fdxN-nifZ-nifT -144 5.2 TGTCGCGAATTCGACA NGR_a01270
Rhodopseudomonas palustris CGA009
Position: -147
Score: 5.07993
Sequence: TGTCAGACTTGCGACA
Position: -129
Score: 4.27653
Sequence: TGTCGGGGGCCTTACA
Locus tag: RPA4631
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: RPA4630
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: RPA4629
Name: frxA
Funciton: 2(4Fe-4S) ferredoxin in Nif regulon, iron-sulfur compound bisynthesis
Locus tag: RPA4628
Name: hesB
Funciton: probable iron binding protein from the HesB_IscA_SufA family in Nif operon
Locus tag: RPA4627
Name: RPA4627
Funciton: Conserved hypothetical protein, associated with nitrogen fixation genes
Locus tag: RPA4626
Name: PF05484
Funciton: LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis
Locus tag: RPA4625
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: RPA4624
Name: nifZ
Funciton: Nitrogen fixation protein NifZ
Locus tag: RPA4623
Name: nifT
Funciton: Nitrogen fixation protein NifT
fdxN-nifB-frxA-hesB-RPA4627-PF05484-nifZ-nifZ-nifT -147 5.1 TGTCAGACTTGCGACA RPA4631
-129 4.3 TGTCGGGGGCCTTACA
Sinorhizobium meliloti 1021
Position: -130
Score: 5.42176
Sequence: TGTCGGAAGTCCGACA
Locus tag: SMa0814
Name: nifB
Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: SMa0811
Name: fdxN
Funciton: 4Fe-4S ferredoxin, nitrogenase-associated
Locus tag: SMa0810
Name: nifT
Funciton: Nitrogen fixation protein NifT
nifB-fdxN-nifT -130 5.4 TGTCGGAAGTCCGACA SMa0814
Xanthobacter autotrophicus Py2
Position: -133
Score: 4.3844
Sequence: TGTCCGGAATCGGACA
Position: -115
Score: 4.11853
Sequence: CGTCGCAAAGACAACA
Locus tag: Xaut_0106
Name: iscN
Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: Xaut_0107
Name: nifU
Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: Xaut_0108
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: Xaut_0109
Name: nifT
Funciton: Nitrogen fixation protein NifT
iscN-nifU-nifS-nifT -133 4.4 TGTCCGGAATCGGACA Xaut_0106
-115 4.1 CGTCGCAAAGACAACA
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