Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nifD gene

Properties
Regulog: NifA - Rhodospirillales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen fixation
Effector:
Phylum: Proteobacteria/alpha
Built upon 54 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Azospirillum sp. B510
Position: -182
Score: 5.49439
Sequence: TGTCGGGACCCCGACA
Locus tag: AZL_007710
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: AZL_007700
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: AZL_007690
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
nifH-nifD-nifK -182 5.5 TGTCGGGACCCCGACA AZL_007710
Gluconacetobacter diazotrophicus PAl 5
Position: -156
Score: 3.966
Sequence: TGTCAGGCTTCGCACA
Locus tag: Gdia_1570
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Gdia_1569
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: Gdia_1568
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: Gdia_1567
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: Gdia_1566
Name: nifN
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: Gdia_1565
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: Gdia_1564
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: Gdia_1563
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: Gdia_1562
Name: fdxB
Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: Gdia_1561
Name: nifQ
Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
nifH-nifD-nifK-nifE-nifN-nifX-PF03270-PF05082-fdxB-nifQ -156 4 TGTCAGGCTTCGCACA Gdia_1570
Magnetospirillum magneticum AMB-1
Position: -223
Score: 4.64413
Sequence: TGTTGGGGTTGCAACA
Position: -193
Score: 4.96037
Sequence: TGTCGGATTCCGCACA
Locus tag: amb1574
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: amb1573
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: amb1572
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
nifH-nifD-nifK -223 4.6 TGTTGGGGTTGCAACA amb1574
-193 5 TGTCGGATTCCGCACA
Magnetospirillum magnetotacticum MS-1
Position: -223
Score: 4.64413
Sequence: TGTTGGGGTTGCAACA
Position: -193
Score: 4.96037
Sequence: TGTCGGATTCCGCACA
Locus tag: Magn03009022
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Magn03009021
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Magn03009020
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: Magn03009019
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
nifH-nifH-nifD-nifK -223 4.6 TGTTGGGGTTGCAACA Magn03009022
-193 5 TGTCGGATTCCGCACA
Rhodospirillum centenum SW
Position: -192
Score: 5.61585
Sequence: TGTCGCGTTTGCGACA
Locus tag: RC1_3683
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: RC1_3682
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: RC1_3681
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: RC1_3680
Name: nifE
Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: RC1_3679
Name: nifX
Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: RC1_3678
Name: PF03270
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: RC1_3677
Name: PF05082
Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
nifH-nifD-nifK-nifE-nifX-PF03270-PF05082 -192 5.6 TGTCGCGTTTGCGACA RC1_3683
Rhodospirillum rubrum ATCC 11170
Position: -222
Score: 5.05213
Sequence: TGTTGGGTCCGCGACA
Position: -192
Score: 5.67265
Sequence: TGTCGGGTTTGCGACA
Locus tag: Rru_A1010
Name: nifH
Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: Rru_A1011
Name: nifD
Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: Rru_A1012
Name: nifK
Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
nifH-nifD-nifK -222 5.1 TGTTGGGTCCGCGACA Rru_A1010
-192 5.7 TGTCGGGTTTGCGACA
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