Orthologous regulated operons containing rbsB gene
| Regulog: | RbsR - Thermotogales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Phylum: | Thermotogae |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Petrotoga mobilis SJ95 | ||||
|
Position: -43
Score: 6.02508 Sequence: TTCCGAAAACGTTTGCATAA
Locus tag: Pmob_0919
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Pmob_0920
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Pmob_0921
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Pmob_0922
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Pmob_0923
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Pmob_0924
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15) |
||||
| rbsR-rbsD-rbsA-rbsC-rbsB-rbsK | -43 | 6 | TTCCGAAAACGTTTGCATAA | Pmob_0919 |
| Thermosipho africanus TCF52B | ||||
|
Position: -42
Score: 6.02071 Sequence: ATACGAAAACGTTTTCGAAA
Position: -30
Score: 5.86333 Sequence: TTTCGAAAACGTTTTCTAGG
Locus tag: THA_669
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: THA_670
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: THA_671
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: THA_672
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: THA_673
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: THA_674
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15) |
||||
| rbsD-rbsA-rbsC-rbsB-rbsR-rbsK | -42 | 6 | ATACGAAAACGTTTTCGAAA | THA_669 |
| -30 | 5.9 | TTTCGAAAACGTTTTCTAGG | ||
| Thermotoga lettingae TMO | ||||
|
Position: -59
Score: 6.5232 Sequence: TCTTGAAAACGTTTTCAAGA
Position: -47
Score: 5.77485 Sequence: TTTCAAGAACGTTTTCAAAA
Locus tag: Tlet_1324
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Tlet_1325
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Tlet_1326
Name: TM0957 Funciton: hypothetical protein
Locus tag: Tlet_1327
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Tlet_1328
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Tlet_1329
Name: tktA Funciton: transketolase, N-terminal subunit
Locus tag: Tlet_1330
Name: tktB Funciton: transketolase, C-terminal subunit
Locus tag: Tlet_1331
Name: drlK Funciton: Predicted D-ribulose kinase, FGGY family
Locus tag: Tlet_1332
Name: darA Funciton: Predicted D-arabinose isomerase |
||||
| rbsR-rbsB-TM0957-rbsA-rbsC-tktA-tktB-drlK-darA | -59 | 6.5 | TCTTGAAAACGTTTTCAAGA | Tlet_1324 |
| -47 | 5.8 | TTTCAAGAACGTTTTCAAAA | ||
| Thermotoga maritima MSB8 | ||||
|
Position: -46
Score: 6.50488 Sequence: TTGTGAAAACGATTTCGAAA
Position: -34
Score: 5.88371 Sequence: TTTCGAAAACGATTTCATCA
Locus tag: TM0960
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: TM0959
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: TM0958
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: TM0957
Name: TM0957 Funciton: hypothetical protein
Locus tag: TM0956
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: TM0955
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: TM0954
Name: tktA Funciton: transketolase, N-terminal subunit
Locus tag: TM0953
Name: tktB Funciton: transketolase, C-terminal subunit
Locus tag: TM0952
Name: drlK Funciton: Predicted D-ribulose kinase, FGGY family
Locus tag: TM0951
Name: darA Funciton: Predicted D-arabinose isomerase
Locus tag: TM0950
Name: TM0950 Funciton: hypothetical protein
Locus tag: TM0949
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family |
||||
| rbsK-rbsD-rbsB-TM0957-rbsA-rbsC-tktA-tktB-drlK-darA-TM0950-rbsR | -46 | 6.5 | TTGTGAAAACGATTTCGAAA | TM0960 |
| -34 | 5.9 | TTTCGAAAACGATTTCATCA | ||
| Thermotoga naphthophila RKU-10 | ||||
|
Position: -56
Score: 6.50488 Sequence: TTGTGAAAACGATTTCGAAA
Position: -44
Score: 6.56563 Sequence: TTTCGAAAACGTTTTCAAAG
Locus tag: Tnap_1790
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Tnap_1791
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Tnap_1792
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Tnap_1793
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Tnap_1794
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Tnap_1795
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
||||
| rbsK-rbsR-rbsD-rbsA-rbsC-rbsB | -56 | 6.5 | TTGTGAAAACGATTTCGAAA | Tnap_1790 |
| -44 | 6.6 | TTTCGAAAACGTTTTCAAAG | ||
| Thermotoga neapolitana DSM 4359 | ||||
|
Position: 32
Score: 6.50488 Sequence: TTGTGAAAACGATTTCGAAA
Position: 44
Score: 5.88371 Sequence: TTTCGAAAACGATTTCATCA
Locus tag: CTN_1616
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: CTN_1617
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: CTN_1618
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: CTN_1619
Name: TM0957 Funciton: hypothetical protein
Locus tag: CTN_1620
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: CTN_1621
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: CTN_1622
Name: tktA Funciton: transketolase, N-terminal subunit
Locus tag: CTN_1623
Name: tktB Funciton: transketolase, C-terminal subunit
Locus tag: CTN_1624
Name: drlK Funciton: Predicted D-ribulose kinase, FGGY family
Locus tag: CTN_1625
Name: darA Funciton: Predicted D-arabinose isomerase
Locus tag: CTN_1626
Name: TM0950 Funciton: hypothetical protein
Locus tag: CTN_1627
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family |
||||
| rbsK-rbsD-rbsB-TM0957-rbsA-rbsC-tktA-tktB-drlK-darA-TM0950-rbsR | 32 | 6.5 | TTGTGAAAACGATTTCGAAA | CTN_1616 |
| 44 | 5.9 | TTTCGAAAACGATTTCATCA | ||
| Thermotoga petrophila RKU-1 | ||||
|
Position: -56
Score: 6.50488 Sequence: TTGTGAAAACGATTTCGAAA
Position: -44
Score: 6.56563 Sequence: TTTCGAAAACGTTTTCAAAG
Locus tag: Tpet_1789
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Tpet_1790
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Tpet_1791
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Tpet_1792
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Tpet_1793
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Tpet_1794
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) |
||||
| rbsK-rbsR-rbsD-rbsA-rbsC-rbsB | -56 | 6.5 | TTGTGAAAACGATTTCGAAA | Tpet_1789 |
| -44 | 6.6 | TTTCGAAAACGTTTTCAAAG | ||
| Thermotogales bacterium TBF 19.5.1 | ||||
|
Position: -39
Score: 5.04608 Sequence: TCATGTAAACGTTTACGTAA
Position: -27
Score: 5.59306 Sequence: TTACGTAAACGTTTTCAGGA
Locus tag: Kole_0605
Name: rbsR Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Kole_0604
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Kole_0603
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Kole_0602
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Kole_0601
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Kole_0600
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1) |
||||
| rbsR-rbsA-rbsC-rbsB-rbsK-rbsD | -39 | 5 | TCATGTAAACGTTTACGTAA | Kole_0605 |
| -27 | 5.6 | TTACGTAAACGTTTTCAGGA | ||