Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rbsD gene

Properties
Regulog: RbsR - Thermotogales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Thermotogae
Built upon 15 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Petrotoga mobilis SJ95
Position: -43
Score: 6.02508
Sequence: TTCCGAAAACGTTTGCATAA
Locus tag: Pmob_0919
Name: rbsR
Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Pmob_0920
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Pmob_0921
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Pmob_0922
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Pmob_0923
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Pmob_0924
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsR-rbsD-rbsA-rbsC-rbsB-rbsK -43 6 TTCCGAAAACGTTTGCATAA Pmob_0919
Thermosipho africanus TCF52B
Position: -42
Score: 6.02071
Sequence: ATACGAAAACGTTTTCGAAA
Position: -30
Score: 5.86333
Sequence: TTTCGAAAACGTTTTCTAGG
Locus tag: THA_669
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: THA_670
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: THA_671
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: THA_672
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: THA_673
Name: rbsR
Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: THA_674
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsD-rbsA-rbsC-rbsB-rbsR-rbsK -42 6 ATACGAAAACGTTTTCGAAA THA_669
-30 5.9 TTTCGAAAACGTTTTCTAGG
Thermotoga maritima MSB8
Position: -46
Score: 6.50488
Sequence: TTGTGAAAACGATTTCGAAA
Position: -34
Score: 5.88371
Sequence: TTTCGAAAACGATTTCATCA
Locus tag: TM0960
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: TM0959
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: TM0958
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: TM0957
Name: TM0957
Funciton: hypothetical protein
Locus tag: TM0956
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: TM0955
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: TM0954
Name: tktA
Funciton: transketolase, N-terminal subunit
Locus tag: TM0953
Name: tktB
Funciton: transketolase, C-terminal subunit
Locus tag: TM0952
Name: drlK
Funciton: Predicted D-ribulose kinase, FGGY family
Locus tag: TM0951
Name: darA
Funciton: Predicted D-arabinose isomerase
Locus tag: TM0950
Name: TM0950
Funciton: hypothetical protein
Locus tag: TM0949
Name: rbsR
Funciton: Predicted regulator of ribose utilization, LacI family
rbsK-rbsD-rbsB-TM0957-rbsA-rbsC-tktA-tktB-drlK-darA-TM0950-rbsR -46 6.5 TTGTGAAAACGATTTCGAAA TM0960
-34 5.9 TTTCGAAAACGATTTCATCA
Thermotoga naphthophila RKU-10
Position: -56
Score: 6.50488
Sequence: TTGTGAAAACGATTTCGAAA
Position: -44
Score: 6.56563
Sequence: TTTCGAAAACGTTTTCAAAG
Locus tag: Tnap_1790
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Tnap_1791
Name: rbsR
Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Tnap_1792
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Tnap_1793
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Tnap_1794
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Tnap_1795
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsK-rbsR-rbsD-rbsA-rbsC-rbsB -56 6.5 TTGTGAAAACGATTTCGAAA Tnap_1790
-44 6.6 TTTCGAAAACGTTTTCAAAG
Thermotoga neapolitana DSM 4359
Position: 32
Score: 6.50488
Sequence: TTGTGAAAACGATTTCGAAA
Position: 44
Score: 5.88371
Sequence: TTTCGAAAACGATTTCATCA
Locus tag: CTN_1616
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: CTN_1617
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: CTN_1618
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: CTN_1619
Name: TM0957
Funciton: hypothetical protein
Locus tag: CTN_1620
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: CTN_1621
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: CTN_1622
Name: tktA
Funciton: transketolase, N-terminal subunit
Locus tag: CTN_1623
Name: tktB
Funciton: transketolase, C-terminal subunit
Locus tag: CTN_1624
Name: drlK
Funciton: Predicted D-ribulose kinase, FGGY family
Locus tag: CTN_1625
Name: darA
Funciton: Predicted D-arabinose isomerase
Locus tag: CTN_1626
Name: TM0950
Funciton: hypothetical protein
Locus tag: CTN_1627
Name: rbsR
Funciton: Predicted regulator of ribose utilization, LacI family
rbsK-rbsD-rbsB-TM0957-rbsA-rbsC-tktA-tktB-drlK-darA-TM0950-rbsR 32 6.5 TTGTGAAAACGATTTCGAAA CTN_1616
44 5.9 TTTCGAAAACGATTTCATCA
Thermotoga petrophila RKU-1
Position: -56
Score: 6.50488
Sequence: TTGTGAAAACGATTTCGAAA
Position: -44
Score: 6.56563
Sequence: TTTCGAAAACGTTTTCAAAG
Locus tag: Tpet_1789
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Tpet_1790
Name: rbsR
Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Tpet_1791
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: Tpet_1792
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Tpet_1793
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Tpet_1794
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsK-rbsR-rbsD-rbsA-rbsC-rbsB -56 6.5 TTGTGAAAACGATTTCGAAA Tpet_1789
-44 6.6 TTTCGAAAACGTTTTCAAAG
Thermotogales bacterium TBF 19.5.1
Position: -39
Score: 5.04608
Sequence: TCATGTAAACGTTTACGTAA
Position: -27
Score: 5.59306
Sequence: TTACGTAAACGTTTTCAGGA
Locus tag: Kole_0605
Name: rbsR
Funciton: Predicted regulator of ribose utilization, LacI family
Locus tag: Kole_0604
Name: rbsA
Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: Kole_0603
Name: rbsC
Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Kole_0602
Name: rbsB
Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Kole_0601
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: Kole_0600
Name: rbsD
Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
rbsR-rbsA-rbsC-rbsB-rbsK-rbsD -39 5 TCATGTAAACGTTTACGTAA Kole_0605
-27 5.6 TTACGTAAACGTTTTCAGGA
© 2009-2020 RegPrecise