Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ccmF-2 gene

Properties
Regulog: TsrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Thiosulfate reduction
Effector: Thiosulfate
Phylum: Proteobacteria/gamma
Built upon 40 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella halifaxensis HAW-EB4
Position: -314
Score: 5.52002
Sequence: ACCTTTTGACATCTAAAAGGAT
Locus tag: Shal_0550
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Shal_0549
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Shal_0548
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -314 5.5 ACCTTTTGACATCTAAAAGGAT Shal_0550
Shewanella loihica PV-4
Position: -169
Score: 6.20201
Sequence: GCATTTTTAGATCTCAAAAAAG
Position: -139
Score: 5.37216
Sequence: GCTTTTTGAGTTATGAAAAATA
Locus tag: Shew_0347
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Shew_0346
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Shew_0345
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -169 6.2 GCATTTTTAGATCTCAAAAAAG Shew_0347
-139 5.4 GCTTTTTGAGTTATGAAAAATA
Shewanella oneidensis MR-1
Position: -281
Score: 6.87076
Sequence: GTTTTTTTAGATCTAAAAAAAC
Locus tag: SO0478
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: SO0477
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: SO0476
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -281 6.9 GTTTTTTTAGATCTAAAAAAAC SO0478
Shewanella pealeana ATCC 700345
Position: -316
Score: 4.79101
Sequence: GCATTTTTTGATATCTAAAAAG
Position: -314
Score: 6.31096
Sequence: ATTTTTTGATATCTAAAAAGAC
Locus tag: Spea_0478
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Spea_0477
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Spea_0476
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -316 4.8 GCATTTTTTGATATCTAAAAAG Spea_0478
-314 6.3 ATTTTTTGATATCTAAAAAGAC
Shewanella piezotolerans WP3
Position: -258
Score: 6.4489
Sequence: TTATTTTTAGATCTAAAAAAAG
Locus tag: swp_4658
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: swp_4659
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: swp_4660
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -258 6.4 TTATTTTTAGATCTAAAAAAAG swp_4658
Shewanella putrefaciens CN-32
Position: -334
Score: 5.98059
Sequence: TGTTTTTTAGAAGTAAAAAAGC
Position: -313
Score: 5.77197
Sequence: CCTGTTTTAGTTATAAAAAAAA
Locus tag: Sputcn32_3365
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Sputcn32_3366
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Sputcn32_3367
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -334 6 TGTTTTTTAGAAGTAAAAAAGC Sputcn32_3365
-313 5.8 CCTGTTTTAGTTATAAAAAAAA
Shewanella sediminis HAW-EB3
Position: -314
Score: 6.12805
Sequence: TGTTTTTTAGATCTAAAAGGAT
Locus tag: Ssed_0481
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Ssed_0480
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Ssed_0479
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -314 6.1 TGTTTTTTAGATCTAAAAGGAT Ssed_0481
Shewanella sp ANA-3
Position: -284
Score: 6.44135
Sequence: GGCTTTTTAGATCTAAAAAGAG
Locus tag: Shewana3_0488
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Shewana3_0487
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Shewana3_0486
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -284 6.4 GGCTTTTTAGATCTAAAAAGAG Shewana3_0488
Shewanella sp MR-4
Position: -315
Score: 6.4162
Sequence: GTTTTTTGAGATATAAAAAGAC
Locus tag: Shewmr4_0487
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Shewmr4_0486
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Shewmr4_0485
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -315 6.4 GTTTTTTGAGATATAAAAAGAC Shewmr4_0487
Shewanella sp MR-7
Position: -316
Score: 6.44938
Sequence: GGTTTTTGAGATCTAAAAAGAC
Locus tag: Shewmr7_3543
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Shewmr7_3544
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Shewmr7_3545
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -316 6.4 GGTTTTTGAGATCTAAAAAGAC Shewmr7_3543
Shewanella sp W3-18-1
Position: -334
Score: 5.98059
Sequence: TGTTTTTTAGAAGTAAAAAAGC
Position: -313
Score: 5.77197
Sequence: CCTGTTTTAGTTATAAAAAAAA
Locus tag: Sputw3181_0576
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Sputw3181_0575
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Sputw3181_0574
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -334 6 TGTTTTTTAGAAGTAAAAAAGC Sputw3181_0576
-313 5.8 CCTGTTTTAGTTATAAAAAAAA
Shewanella woodyi ATCC 51908
Position: -320
Score: 5.73365
Sequence: GTTTTTTGATATCTAAAAGGTT
Locus tag: Swoo_4478
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Swoo_4479
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Swoo_4480
Name: ccmH
Funciton: Thioredoxin
ccmF-2-ccmL-ccmH -320 5.7 GTTTTTTGATATCTAAAAGGTT Swoo_4478
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