Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing colA2 gene

Properties
Regulog: HypR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Built upon 96 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -48
Score: 3.71162
Sequence: AAAATATACAAT
Locus tag: Sama_1517
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2 -48 3.7 AAAATATACAAT Sama_1517
Shewanella halifaxensis HAW-EB4
Position: -43
Score: 4.7107
Sequence: ATTGTATTCAAT
Locus tag: Shal_0031
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2 -43 4.7 ATTGTATTCAAT Shal_0031
Shewanella loihica PV-4
Position: -28
Score: 4.87792
Sequence: ATTGTATGCAAA
Locus tag: Shew_3732
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2 -28 4.9 ATTGTATGCAAA Shew_3732
Shewanella pealeana ATCC 700345
Position: -107
Score: 4.7107
Sequence: ATTGTATTCAAT
Locus tag: Spea_0035
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2 -107 4.7 ATTGTATTCAAT Spea_0035
Shewanella piezotolerans WP3
Position: -71
Score: 3.43173
Sequence: GTTGTATACATC
Position: -30
Score: 4.65457
Sequence: ATTGTATCCAAA
Locus tag: swp_0061
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2 -71 3.4 GTTGTATACATC swp_0061
-30 4.7 ATTGTATCCAAA
Shewanella sediminis HAW-EB3
Position: -28
Score: 4.87792
Sequence: ATTGTATGCAAA
Locus tag: Ssed_0039
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2 -28 4.9 ATTGTATGCAAA Ssed_0039
Shewanella woodyi ATCC 51908
Position: -28
Score: 4.65457
Sequence: ATTGTATCCAAA
Locus tag: Swoo_0042
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2 -28 4.7 ATTGTATCCAAA Swoo_0042
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