Orthologous regulated operons containing hypH gene
| Regulog: | HypR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella amazonensis SB2B | ||||
|
Position: -183
Score: 4.55693 Sequence: AATGTATGCAAT
Position: -110
Score: 5.32149 Sequence: ATTGTATACAAT
Position: -19
Score: 3.39882 Sequence: TTGGTATAAAGA
Locus tag: Sama_1531
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Sama_1530
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Sama_1529
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Sama_1528
Name: hypR Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family |
||||
| hypD-hypE-hypH-hypR | -183 | 4.6 | AATGTATGCAAT | Sama_1531 |
| -110 | 5.3 | ATTGTATACAAT | ||
| -19 | 3.4 | TTGGTATAAAGA | ||
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -146
Score: 5.32149 Sequence: ATTGTATACAAT
Position: -65
Score: 3.86645 Sequence: TGCGTATACAAT
Locus tag: Shal_2555
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Shal_2556
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shal_2557
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
||||
| hypD-hypE-hypH | -146 | 5.3 | ATTGTATACAAT | Shal_2555 |
| -65 | 3.9 | TGCGTATACAAT | ||
| Shewanella loihica PV-4 | ||||
|
Position: -183
Score: 4.87792 Sequence: TTTGTATGCAAT
Position: -97
Score: 5.32149 Sequence: ATTGTATACAAT
Locus tag: Shew_2362
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Shew_2363
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shew_2364
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Shew_2365
Name: hypR Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family |
||||
| hypD-hypE-hypH-hypR | -183 | 4.9 | TTTGTATGCAAT | Shew_2362 |
| -97 | 5.3 | ATTGTATACAAT | ||
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -157
Score: 5.32149 Sequence: ATTGTATACAAT
Position: -76
Score: 3.86645 Sequence: TGCGTATACAAT
Locus tag: Spea_1704
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Spea_1703
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Spea_1702
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
||||
| hypD-hypE-hypH | -157 | 5.3 | ATTGTATACAAT | Spea_1704 |
| -76 | 3.9 | TGCGTATACAAT | ||
| Shewanella piezotolerans WP3 | ||||
|
Position: -138
Score: 5.32149 Sequence: ATTGTATACAAT
Locus tag: swp_1984
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: swp_1983
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: swp_1982
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
||||
| hypD-hypE-hypH | -138 | 5.3 | ATTGTATACAAT | swp_1984 |
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -171
Score: 4.87792 Sequence: TTTGTATGCAAT
Position: -98
Score: 5.32149 Sequence: ATTGTATACAAT
Locus tag: Ssed_1762
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Ssed_1761
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Ssed_1760
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Ssed_1759
Name: hypR Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family |
||||
| hypD-hypE-hypH-hypR | -171 | 4.9 | TTTGTATGCAAT | Ssed_1762 |
| -98 | 5.3 | ATTGTATACAAT | ||
| Shewanella woodyi ATCC 51908 | ||||
|
Position: -169
Score: 4.87792 Sequence: TTTGTATGCAAT
Position: -95
Score: 5.32149 Sequence: ATTGTATACAAT
Locus tag: Swoo_2822
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Swoo_2823
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Swoo_2824
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Swoo_2825
Name: hypR Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family |
||||
| hypD-hypE-hypH-hypR | -169 | 4.9 | TTTGTATGCAAT | Swoo_2822 |
| -95 | 5.3 | ATTGTATACAAT | ||