Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing hypD gene

Properties
Regulog: HypR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Built upon 96 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -183
Score: 4.55693
Sequence: AATGTATGCAAT
Position: -110
Score: 5.32149
Sequence: ATTGTATACAAT
Position: -19
Score: 3.39882
Sequence: TTGGTATAAAGA
Locus tag: Sama_1531
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Sama_1530
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Sama_1529
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Sama_1528
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
hypD-hypE-hypH-hypR -183 4.6 AATGTATGCAAT Sama_1531
-110 5.3 ATTGTATACAAT
-19 3.4 TTGGTATAAAGA
Shewanella halifaxensis HAW-EB4
Position: -146
Score: 5.32149
Sequence: ATTGTATACAAT
Position: -65
Score: 3.86645
Sequence: TGCGTATACAAT
Locus tag: Shal_2555
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Shal_2556
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shal_2557
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
hypD-hypE-hypH -146 5.3 ATTGTATACAAT Shal_2555
-65 3.9 TGCGTATACAAT
Shewanella loihica PV-4
Position: -183
Score: 4.87792
Sequence: TTTGTATGCAAT
Position: -97
Score: 5.32149
Sequence: ATTGTATACAAT
Locus tag: Shew_2362
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Shew_2363
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shew_2364
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Shew_2365
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
hypD-hypE-hypH-hypR -183 4.9 TTTGTATGCAAT Shew_2362
-97 5.3 ATTGTATACAAT
Shewanella pealeana ATCC 700345
Position: -157
Score: 5.32149
Sequence: ATTGTATACAAT
Position: -76
Score: 3.86645
Sequence: TGCGTATACAAT
Locus tag: Spea_1704
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Spea_1703
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Spea_1702
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
hypD-hypE-hypH -157 5.3 ATTGTATACAAT Spea_1704
-76 3.9 TGCGTATACAAT
Shewanella piezotolerans WP3
Position: -138
Score: 5.32149
Sequence: ATTGTATACAAT
Locus tag: swp_1984
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: swp_1983
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: swp_1982
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
hypD-hypE-hypH -138 5.3 ATTGTATACAAT swp_1984
Shewanella sediminis HAW-EB3
Position: -171
Score: 4.87792
Sequence: TTTGTATGCAAT
Position: -98
Score: 5.32149
Sequence: ATTGTATACAAT
Locus tag: Ssed_1762
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Ssed_1761
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Ssed_1760
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Ssed_1759
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
hypD-hypE-hypH-hypR -171 4.9 TTTGTATGCAAT Ssed_1762
-98 5.3 ATTGTATACAAT
Shewanella woodyi ATCC 51908
Position: -169
Score: 4.87792
Sequence: TTTGTATGCAAT
Position: -95
Score: 5.32149
Sequence: ATTGTATACAAT
Locus tag: Swoo_2822
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Swoo_2823
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Swoo_2824
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Swoo_2825
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
hypD-hypE-hypH-hypR -169 4.9 TTTGTATGCAAT Swoo_2822
-95 5.3 ATTGTATACAAT
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