Orthologous regulated operons containing prpF gene
| Regulog: | PrpR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Phylum: | Proteobacteria/gamma |
| Operon | Position | Score | Sequence | Locus Tag of the First Gene |
|---|---|---|---|---|
| Shewanella amazonensis SB2B | ||||
|
Position: -228
Score: 4.75466 Sequence: GTTGTTGACAAT
Position: -83
Score: 5.1775 Sequence: ATTGTTGACAAT
Locus tag: Sama_3293
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sama_3294
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sama_3295
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sama_3296
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sama_3297
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -228 | 4.8 | GTTGTTGACAAT | Sama_3293 |
| -83 | 5.2 | ATTGTTGACAAT | ||
| Shewanella baltica OS155 | ||||
|
Position: -204
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -73
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -34
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Sbal_4046
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sbal_4047
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sbal_4048
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sbal_4049
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sbal_4050
Name: prpF Funciton: Aconitase accessory protein PrpF
Locus tag: Sbal_4051
Name: prpB2 Funciton: Methylisocitrate lyase (EC 4.1.3.30) |
||||
| prpR-prpB-prpC-acnD-prpF-prpB2 | -204 | 5.2 | ATTGTTGACAAT | Sbal_4046 |
| -73 | 5.2 | ATTGTTGACAAT | ||
| -34 | 5.9 | ATTGTCGACAAT | ||
| Shewanella denitrificans OS217 | ||||
|
Position: -87
Score: 5.54402 Sequence: TTTGTCGACAAT
Position: -65
Score: 4.48838 Sequence: ATTGTTGACCAT
Position: -35
Score: 5.44377 Sequence: ATTGTCGACAAC
Locus tag: Sden_1663
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sden_1664
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sden_1665
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sden_1666
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sden_1667
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -87 | 5.5 | TTTGTCGACAAT | Sden_1663 |
| -65 | 4.5 | ATTGTTGACCAT | ||
| -35 | 5.4 | ATTGTCGACAAC | ||
| Shewanella frigidimarina NCIMB 400 | ||||
|
Position: -117
Score: 5.54402 Sequence: ATTGTCGACAAA
Position: -65
Score: 5.44377 Sequence: ATTGTCGACAAC
Locus tag: Sfri_1856
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sfri_1857
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sfri_1858
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sfri_1859
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sfri_1860
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -117 | 5.5 | ATTGTCGACAAA | Sfri_1856 |
| -65 | 5.4 | ATTGTCGACAAC | ||
| Shewanella halifaxensis HAW-EB4 | ||||
|
Position: -93
Score: 5.54402 Sequence: TTTGTCGACAAT
Position: -71
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -41
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Shal_1960
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shal_1961
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shal_1962
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shal_1963
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shal_1964
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -93 | 5.5 | TTTGTCGACAAT | Shal_1960 |
| -71 | 5.2 | ATTGTTGACAAT | ||
| -41 | 5.9 | ATTGTCGACAAT | ||
| Shewanella loihica PV-4 | ||||
|
Position: -292
Score: 5.54402 Sequence: TTTGTCGACAAT
Position: -92
Score: 5.54402 Sequence: TTTGTCGACAAT
Position: -40
Score: 5.44377 Sequence: ATTGTCGACAAC
Locus tag: Shew_1819
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shew_1820
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shew_1821
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shew_1822
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shew_1823
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -292 | 5.5 | TTTGTCGACAAT | Shew_1819 |
| -92 | 5.5 | TTTGTCGACAAT | ||
| -40 | 5.4 | ATTGTCGACAAC | ||
| Shewanella oneidensis MR-1 | ||||
|
Position: -256
Score: 5.86661 Sequence: ATTGTCGACAAT
Position: -125
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -86
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: SO0346
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: SO0345
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: SO0344
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: SO0343
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: SO0342
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -256 | 5.9 | ATTGTCGACAAT | SO0346 |
| -125 | 5.2 | ATTGTTGACAAT | ||
| -86 | 5.9 | ATTGTCGACAAT | ||
| Shewanella pealeana ATCC 700345 | ||||
|
Position: -93
Score: 5.54402 Sequence: TTTGTCGACAAT
Position: -71
Score: 4.48838 Sequence: ATTGTTGACTAT
Position: -41
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Spea_2323
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Spea_2322
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Spea_2321
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Spea_2320
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Spea_2319
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -93 | 5.5 | TTTGTCGACAAT | Spea_2323 |
| -71 | 4.5 | ATTGTTGACTAT | ||
| -41 | 5.9 | ATTGTCGACAAT | ||
| Shewanella piezotolerans WP3 | ||||
|
Position: -92
Score: 5.54402 Sequence: TTTGTCGACAAT
Position: -40
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: swp_2427
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: swp_2428
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: swp_2429
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: swp_2430
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: swp_2431
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -92 | 5.5 | TTTGTCGACAAT | swp_2427 |
| -40 | 5.9 | ATTGTCGACAAT | ||
| Shewanella putrefaciens CN-32 | ||||
|
Position: -204
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -73
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -34
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Sputcn32_3643
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sputcn32_3644
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sputcn32_3645
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sputcn32_3646
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sputcn32_3647
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -204 | 5.2 | ATTGTTGACAAT | Sputcn32_3643 |
| -73 | 5.2 | ATTGTTGACAAT | ||
| -34 | 5.9 | ATTGTCGACAAT | ||
| Shewanella sediminis HAW-EB3 | ||||
|
Position: -91
Score: 5.54402 Sequence: TTTGTCGACAAT
Position: -38
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Ssed_2110
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Ssed_2111
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Ssed_2112
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Ssed_2113
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Ssed_2114
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -91 | 5.5 | TTTGTCGACAAT | Ssed_2110 |
| -38 | 5.9 | ATTGTCGACAAT | ||
| Shewanella sp ANA-3 | ||||
|
Position: -208
Score: 5.86661 Sequence: ATTGTCGACAAT
Position: -77
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -38
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Shewana3_3824
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shewana3_3825
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shewana3_3826
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shewana3_3827
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shewana3_3828
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -208 | 5.9 | ATTGTCGACAAT | Shewana3_3824 |
| -77 | 5.2 | ATTGTTGACAAT | ||
| -38 | 5.9 | ATTGTCGACAAT | ||
| Shewanella sp MR-4 | ||||
|
Position: -209
Score: 5.86661 Sequence: ATTGTCGACAAT
Position: -77
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -38
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Shewmr4_3628
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shewmr4_3629
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shewmr4_3630
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shewmr4_3631
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shewmr4_3632
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -209 | 5.9 | ATTGTCGACAAT | Shewmr4_3628 |
| -77 | 5.2 | ATTGTTGACAAT | ||
| -38 | 5.9 | ATTGTCGACAAT | ||
| Shewanella sp MR-7 | ||||
|
Position: -209
Score: 5.86661 Sequence: ATTGTCGACAAT
Position: -77
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -38
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Shewmr7_0316
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shewmr7_0315
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shewmr7_0314
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shewmr7_0313
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shewmr7_0312
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -209 | 5.9 | ATTGTCGACAAT | Shewmr7_0316 |
| -77 | 5.2 | ATTGTTGACAAT | ||
| -38 | 5.9 | ATTGTCGACAAT | ||
| Shewanella sp W3-18-1 | ||||
|
Position: -204
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -73
Score: 5.1775 Sequence: ATTGTTGACAAT
Position: -34
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Sputw3181_3783
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sputw3181_3784
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sputw3181_3785
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sputw3181_3786
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sputw3181_3787
Name: prpF Funciton: Aconitase accessory protein PrpF
Locus tag: Sputw3181_3788
Name: prpB2 Funciton: Methylisocitrate lyase (EC 4.1.3.30) |
||||
| prpR-prpB-prpC-acnD-prpF-prpB2 | -204 | 5.2 | ATTGTTGACAAT | Sputw3181_3783 |
| -73 | 5.2 | ATTGTTGACAAT | ||
| -34 | 5.9 | ATTGTCGACAAT | ||
| Shewanella woodyi ATCC 51908 | ||||
|
Position: -92
Score: 5.86661 Sequence: ATTGTCGACAAT
Position: -40
Score: 5.86661 Sequence: ATTGTCGACAAT
Locus tag: Swoo_2500
Name: prpR Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Swoo_2499
Name: prpB Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Swoo_2498
Name: prpC Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Swoo_2497
Name: acnD Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Swoo_2496
Name: prpF Funciton: Aconitase accessory protein PrpF |
||||
| prpR-prpB-prpC-acnD-prpF | -92 | 5.9 | ATTGTCGACAAT | Swoo_2500 |
| -40 | 5.9 | ATTGTCGACAAT | ||