Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing prpF gene

Properties
Regulog: PrpR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/gamma
Built upon 48 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -228
Score: 4.75466
Sequence: GTTGTTGACAAT
Position: -83
Score: 5.1775
Sequence: ATTGTTGACAAT
Locus tag: Sama_3293
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sama_3294
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sama_3295
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sama_3296
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sama_3297
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -228 4.8 GTTGTTGACAAT Sama_3293
-83 5.2 ATTGTTGACAAT
Shewanella baltica OS155
Position: -204
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -73
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -34
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Sbal_4046
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sbal_4047
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sbal_4048
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sbal_4049
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sbal_4050
Name: prpF
Funciton: Aconitase accessory protein PrpF
Locus tag: Sbal_4051
Name: prpB2
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
prpR-prpB-prpC-acnD-prpF-prpB2 -204 5.2 ATTGTTGACAAT Sbal_4046
-73 5.2 ATTGTTGACAAT
-34 5.9 ATTGTCGACAAT
Shewanella denitrificans OS217
Position: -87
Score: 5.54402
Sequence: TTTGTCGACAAT
Position: -65
Score: 4.48838
Sequence: ATTGTTGACCAT
Position: -35
Score: 5.44377
Sequence: ATTGTCGACAAC
Locus tag: Sden_1663
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sden_1664
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sden_1665
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sden_1666
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sden_1667
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -87 5.5 TTTGTCGACAAT Sden_1663
-65 4.5 ATTGTTGACCAT
-35 5.4 ATTGTCGACAAC
Shewanella frigidimarina NCIMB 400
Position: -117
Score: 5.54402
Sequence: ATTGTCGACAAA
Position: -65
Score: 5.44377
Sequence: ATTGTCGACAAC
Locus tag: Sfri_1856
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sfri_1857
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sfri_1858
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sfri_1859
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sfri_1860
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -117 5.5 ATTGTCGACAAA Sfri_1856
-65 5.4 ATTGTCGACAAC
Shewanella halifaxensis HAW-EB4
Position: -93
Score: 5.54402
Sequence: TTTGTCGACAAT
Position: -71
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -41
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Shal_1960
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shal_1961
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shal_1962
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shal_1963
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shal_1964
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -93 5.5 TTTGTCGACAAT Shal_1960
-71 5.2 ATTGTTGACAAT
-41 5.9 ATTGTCGACAAT
Shewanella loihica PV-4
Position: -292
Score: 5.54402
Sequence: TTTGTCGACAAT
Position: -92
Score: 5.54402
Sequence: TTTGTCGACAAT
Position: -40
Score: 5.44377
Sequence: ATTGTCGACAAC
Locus tag: Shew_1819
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shew_1820
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shew_1821
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shew_1822
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shew_1823
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -292 5.5 TTTGTCGACAAT Shew_1819
-92 5.5 TTTGTCGACAAT
-40 5.4 ATTGTCGACAAC
Shewanella oneidensis MR-1
Position: -256
Score: 5.86661
Sequence: ATTGTCGACAAT
Position: -125
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -86
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: SO0346
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: SO0345
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: SO0344
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: SO0343
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: SO0342
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -256 5.9 ATTGTCGACAAT SO0346
-125 5.2 ATTGTTGACAAT
-86 5.9 ATTGTCGACAAT
Shewanella pealeana ATCC 700345
Position: -93
Score: 5.54402
Sequence: TTTGTCGACAAT
Position: -71
Score: 4.48838
Sequence: ATTGTTGACTAT
Position: -41
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Spea_2323
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Spea_2322
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Spea_2321
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Spea_2320
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Spea_2319
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -93 5.5 TTTGTCGACAAT Spea_2323
-71 4.5 ATTGTTGACTAT
-41 5.9 ATTGTCGACAAT
Shewanella piezotolerans WP3
Position: -92
Score: 5.54402
Sequence: TTTGTCGACAAT
Position: -40
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: swp_2427
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: swp_2428
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: swp_2429
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: swp_2430
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: swp_2431
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -92 5.5 TTTGTCGACAAT swp_2427
-40 5.9 ATTGTCGACAAT
Shewanella putrefaciens CN-32
Position: -204
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -73
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -34
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Sputcn32_3643
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sputcn32_3644
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sputcn32_3645
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sputcn32_3646
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sputcn32_3647
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -204 5.2 ATTGTTGACAAT Sputcn32_3643
-73 5.2 ATTGTTGACAAT
-34 5.9 ATTGTCGACAAT
Shewanella sediminis HAW-EB3
Position: -91
Score: 5.54402
Sequence: TTTGTCGACAAT
Position: -38
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Ssed_2110
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Ssed_2111
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Ssed_2112
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Ssed_2113
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Ssed_2114
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -91 5.5 TTTGTCGACAAT Ssed_2110
-38 5.9 ATTGTCGACAAT
Shewanella sp ANA-3
Position: -208
Score: 5.86661
Sequence: ATTGTCGACAAT
Position: -77
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -38
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Shewana3_3824
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shewana3_3825
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shewana3_3826
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shewana3_3827
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shewana3_3828
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -208 5.9 ATTGTCGACAAT Shewana3_3824
-77 5.2 ATTGTTGACAAT
-38 5.9 ATTGTCGACAAT
Shewanella sp MR-4
Position: -209
Score: 5.86661
Sequence: ATTGTCGACAAT
Position: -77
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -38
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Shewmr4_3628
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shewmr4_3629
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shewmr4_3630
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shewmr4_3631
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shewmr4_3632
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -209 5.9 ATTGTCGACAAT Shewmr4_3628
-77 5.2 ATTGTTGACAAT
-38 5.9 ATTGTCGACAAT
Shewanella sp MR-7
Position: -209
Score: 5.86661
Sequence: ATTGTCGACAAT
Position: -77
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -38
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Shewmr7_0316
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Shewmr7_0315
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Shewmr7_0314
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Shewmr7_0313
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Shewmr7_0312
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -209 5.9 ATTGTCGACAAT Shewmr7_0316
-77 5.2 ATTGTTGACAAT
-38 5.9 ATTGTCGACAAT
Shewanella sp W3-18-1
Position: -204
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -73
Score: 5.1775
Sequence: ATTGTTGACAAT
Position: -34
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Sputw3181_3783
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Sputw3181_3784
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Sputw3181_3785
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Sputw3181_3786
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Sputw3181_3787
Name: prpF
Funciton: Aconitase accessory protein PrpF
Locus tag: Sputw3181_3788
Name: prpB2
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
prpR-prpB-prpC-acnD-prpF-prpB2 -204 5.2 ATTGTTGACAAT Sputw3181_3783
-73 5.2 ATTGTTGACAAT
-34 5.9 ATTGTCGACAAT
Shewanella woodyi ATCC 51908
Position: -92
Score: 5.86661
Sequence: ATTGTCGACAAT
Position: -40
Score: 5.86661
Sequence: ATTGTCGACAAT
Locus tag: Swoo_2500
Name: prpR
Funciton: Propionate catabolism operon transcriptional regulator of GntR family
Locus tag: Swoo_2499
Name: prpB
Funciton: Methylisocitrate lyase (EC 4.1.3.30)
Locus tag: Swoo_2498
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
Locus tag: Swoo_2497
Name: acnD
Funciton: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Locus tag: Swoo_2496
Name: prpF
Funciton: Aconitase accessory protein PrpF
prpR-prpB-prpC-acnD-prpF -92 5.9 ATTGTCGACAAT Swoo_2500
-40 5.9 ATTGTCGACAAT
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