Orthologous regulated operons containing hypD gene

Properties
Regulog:	HypR - Alteromonadales
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	Proline; 4-hydroxyproline
Phylum:	Proteobacteria/gamma

Built upon 21 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Alteromonadales bacterium TW-7
Position: -45 Score: 4.7364 Sequence: ACTGTATACAAT Locus tag: ATW7_13098 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
hypD	-45	4.7	ACTGTATACAAT	ATW7_13098
Colwellia psychrerythraea 34H
Position: -100 Score: 5.32149 Sequence: ATTGTATACAAT Locus tag: CPS_1449 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted Locus tag: CPS_1450 Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypD-hypE	-100	5.3	ATTGTATACAAT	CPS_1449
Pseudoalteromonas tunicata D2
Position: -65 Score: 5.01168 Sequence: ATTGCATACAAT Locus tag: PTD2_14397 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted Locus tag: PTD2_14402 Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: PTD2_14407 Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible Locus tag: PTD2_14412 Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
hypD-hypE-hypH-hypR	-65	5	ATTGCATACAAT	PTD2_14397

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --