Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing colA1 gene

Properties
Regulog: HypR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Phylum: Proteobacteria/gamma
Built upon 96 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -38
Score: 4.96115
Sequence: ATTGCATACAAT
Locus tag: Sama_1077
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1 -38 5 ATTGCATACAAT Sama_1077
Shewanella halifaxensis HAW-EB4
Position: -5
Score: 5.06772
Sequence: ATTGTATGCAAA
Locus tag: Shal_3056
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1 -5 5.1 ATTGTATGCAAA Shal_3056
Shewanella loihica PV-4
Position: -51
Score: 5.018
Sequence: ATTTTATACAAA
Locus tag: Shew_2743
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1 -51 5 ATTTTATACAAA Shew_2743
Shewanella pealeana ATCC 700345
Position: -5
Score: 5.06772
Sequence: ATTGTATGCAAA
Locus tag: Spea_2966
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1 -5 5.1 ATTGTATGCAAA Spea_2966
Shewanella piezotolerans WP3
Position: -35
Score: 5.06772
Sequence: ATTGTATGCAAA
Locus tag: swp_1269
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1 -35 5.1 ATTGTATGCAAA swp_1269
Shewanella sediminis HAW-EB3
Position: -35
Score: 5.36724
Sequence: ATTGTATACAAA
Locus tag: Ssed_3300
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1 -35 5.4 ATTGTATACAAA Ssed_3300
Shewanella woodyi ATCC 51908
Position: -35
Score: 4.57853
Sequence: ACTTTATACAAT
Locus tag: Swoo_3449
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1 -35 4.6 ACTTTATACAAT Swoo_3449
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