Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ntrC gene

Properties
Regulog: NtrC - Rhodobacterales
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/alpha
Built upon 92 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Hyphomonas neptunium ATCC 15444
Position: -10
Score: 4.52408
Sequence: TGCCCATGATTTGTGCG
Locus tag: HNE_2013
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: HNE_2012
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: HNE_2011
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: HNE_2010
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: HNE_2009
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -10 4.5 TGCCCATGATTTGTGCG HNE_2013
Jannaschia sp. CCS1
Position: -54
Score: 5.12997
Sequence: TGCTTAATTATTGTGCA
Locus tag: Jann_2236
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: Jann_2237
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Jann_2238
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: Jann_2239
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: Jann_2240
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -54 5.1 TGCTTAATTATTGTGCA Jann_2236
Loktanella vestfoldensis SKA53
Position: -109
Score: 4.98242
Sequence: TGACTAATTTTTAGGCA
Locus tag: SKA53_04878
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: SKA53_04873
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: SKA53_04868
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: SKA53_04863
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: SKA53_04858
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -109 5 TGACTAATTTTTAGGCA SKA53_04878
Oceanicola batsensis HTCC2597
Position: -108
Score: 4.63409
Sequence: TGTTCAAAATTTAGGCA
Position: -16
Score: 4.81932
Sequence: TGCACAAGGTTTAGGCA
Locus tag: OB2597_03097
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: OB2597_03102
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: OB2597_03107
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: OB2597_03112
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: OB2597_03117
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -108 4.6 TGTTCAAAATTTAGGCA OB2597_03097
-16 4.8 TGCACAAGGTTTAGGCA
Oceanicola granulosus HTCC2516
Position: -110
Score: 4.40469
Sequence: CGCACAAAAAACAGGCA
Position: -18
Score: 4.7268
Sequence: CGCACAATGTTTGAGCA
Locus tag: OG2516_04471
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: OG2516_04466
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: OG2516_04461
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: OG2516_04456
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: OG2516_04451
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -110 4.4 CGCACAAAAAACAGGCA OG2516_04471
-18 4.7 CGCACAATGTTTGAGCA
Paracoccus denitrificans PD1222
Position: -121
Score: 4.31738
Sequence: TGCCGACTATTTAGGCA
Locus tag: Pden_4131
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: Pden_4130
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Pden_4129
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: Pden_4128
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: Pden_4127
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -121 4.3 TGCCGACTATTTAGGCA Pden_4131
Rhodobacter sphaeroides 2.4.1
Position: -108
Score: 4.77738
Sequence: CGCCCAATAAATGTGCA
Position: -18
Score: 4.37723
Sequence: CGCACAAGGAATAGGCA
Locus tag: RSP_2836
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: RSP_2837
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RSP_2838
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: RSP_2839
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: RSP_2840
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -108 4.8 CGCCCAATAAATGTGCA RSP_2836
-18 4.4 CGCACAAGGAATAGGCA
Rhodobacterales bacterium HTCC2654
Position: -107
Score: 4.58462
Sequence: TGCACAAATAACAGGCA
Position: -17
Score: 4.53169
Sequence: CGCACAAGGATTAAGCA
Locus tag: RB2654_03209
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: RB2654_03214
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RB2654_03219
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: RB2654_03224
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: RB2654_03229
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -107 4.6 TGCACAAATAACAGGCA RB2654_03209
-17 4.5 CGCACAAGGATTAAGCA
Roseobacter sp. MED193
Position: -165
Score: 5.16253
Sequence: TGCTTAAAATTTAGGCA
Position: -72
Score: 4.65939
Sequence: CGCACAAGGATTAGGCA
Locus tag: MED193_04621
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: MED193_04616
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: MED193_04611
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: MED193_04606
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: MED193_04601
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -165 5.2 TGCTTAAAATTTAGGCA MED193_04621
-72 4.7 CGCACAAGGATTAGGCA
Roseovarius nubinhibens ISM
Position: -108
Score: 5.08998
Sequence: TGCTTAAATTTTGTGCA
Position: -18
Score: 4.71162
Sequence: TGCACAAGGATTAAGCA
Locus tag: ISM_16645
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: ISM_16640
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: ISM_16635
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: ISM_16630
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: ISM_16625
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -108 5.1 TGCTTAAATTTTGTGCA ISM_16645
-18 4.7 TGCACAAGGATTAAGCA
Roseovarius sp. 217
Position: -113
Score: 4.95037
Sequence: CGCCTAAAAATTAGGCG
Position: -21
Score: 4.83932
Sequence: TGCACAAGGATTAGGCA
Locus tag: ROS217_20467
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: ROS217_20462
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: ROS217_20457
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: ROS217_20452
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: ROS217_20447
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -113 5 CGCCTAAAAATTAGGCG ROS217_20467
-21 4.8 TGCACAAGGATTAGGCA
Silicibacter TM1040
Position: -111
Score: 4.57256
Sequence: TGATTAAAAAATAGGCA
Position: -18
Score: 4.72982
Sequence: TGCATAAGGATTAAGCA
Locus tag: TM1040_1363
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: TM1040_1362
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: TM1040_1361
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: TM1040_1360
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: TM1040_1359
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -111 4.6 TGATTAAAAAATAGGCA TM1040_1363
-18 4.7 TGCATAAGGATTAAGCA
Silicibacter pomeroyi DSS-3
Position: -112
Score: 4.67479
Sequence: CGATTAAAAATTAGGCA
Position: -20
Score: 4.83932
Sequence: TGCACAAGGATTAGGCA
Locus tag: SPO2089
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: SPO2088
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: SPO2087
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: SPO2086
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: SPO2085
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -112 4.7 CGATTAAAAATTAGGCA SPO2089
-20 4.8 TGCACAAGGATTAGGCA
Sulfitobacter sp. EE-36
Position: -111
Score: 5.29023
Sequence: TGCCTAAATTTTAGGCA
Position: -18
Score: 4.53169
Sequence: TGCACAAGGATTAAGCG
Locus tag: EE36_14997
Name: nifR3
Funciton: Predicted oxidoreductase, FAD binding
Locus tag: EE36_15002
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: EE36_15007
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: EE36_15012
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: EE36_15017
Name: ntrX
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3-ntrB-ntrC-ntrY-ntrX -111 5.3 TGCCTAAATTTTAGGCA EE36_14997
-18 4.5 TGCACAAGGATTAAGCG
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